Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2183 ATGAATCCAGCATTGAGGGCAACGGGATACCGTGCGCTAGAAGTAACCGACACGCGAAAAGCAACACCAGCATCCGATGTCTACAGTTTTGGGGTGCTGCTGCTTGAGCTTCTAACTGGGAGGTCTCCCTTGCATGCCAAAGGAGGTGAGGAGGTTGTCCACTTGGTTAGGTGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAGGTGTTTGATGTGGAGTTACTGAGGTATCCAAATATAGAGGAAGAAATGGTAGAGATGCTACAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAGAGACCAAAAATAGAAGAGGTGGTGAGAATGGTGGAGGAAATTCGTAGAGTAAATGCTGAAAATAGATCATCCACTGAATCTAGATCAGAAGGTTCCACTCCAACGCCTCATGCAATTGAGACACCTTCTACCTCTTTTGCACATTGA 456 0.4671 MNPALRATGYRALEVTDTRKATPASDVYSFGVLLLELLTGRSPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTPDQRPKIEEVVRMVEEIRRVNAENRSSTESRSEGSTPTPHAIETPSTSFAH 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2183 151 MobiDBLite consensus disorder prediction 121 151 - -
Ssu6g2183 151 SUPERFAMILY Protein kinase-like (PK-like) 9 124 IPR011009 -
Ssu6g2183 151 Pfam Protein tyrosine and serine/threonine kinase 10 112 IPR001245 GO:0004672|GO:0006468
Ssu6g2183 151 Gene3D Transferase(Phosphotransferase) domain 1 1 138 - -
Ssu6g2183 151 MobiDBLite consensus disorder prediction 127 151 - -
Ssu6g2183 151 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2183 151 PANTHER LRR RECEPTOR-LIKE KINASE 1 144 - -
Ssu6g2183 151 PANTHER OS05G0588300 PROTEIN 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2183 Ssu-Chr6 46422242 46422697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2183 3 142 Receptor kinase-like Gene Family AT4G23740 62.069 6.44e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g2183 PK_Tyr_Ser-Thr 6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2183 - - gmx:100810095 268.47