Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2180 AtggaacaacaacaacaacatcagaGCATCCTATGCAAGTACACTGTACACCATAGTGTCacaaaaaaacacacaaagTCAAAGAACGGCGCCCGTTCGCCTAAAGTAATTTCCATATCCGTAACCGATCCATACGCCACAGACTCATCCAGCGACGAAGAAACAGAACACGTCCCTCGCCAGCGCGTGAGGCGCTACGTCAACAGAATCGAACTTCAGTCGTCGTGCGAAACCGCCACTTCCAATCTCAGAAAGCGACCAGCCGGAGAAGCCGCCGGTTTCCGGCCGCCGGCGAAGGTCTCCAATTCCGGCACCGTCAAAAAGTTCCGCGGCGTGCGGCAGAGACCGTGGGGAAAATGGGCGGCGGAGATTCGAGACCCCGCGCGGCGCGTGAGGCTCTGGCTCGGAACCTACGACACCGCCGAAGAAGCTGCTGTGGTTTACGACAATGCCGCGATCAGGCTTCGCGGCCCCGACGCGTTAACCAACTTCGTCACGCCGCCGGCGAAGGAAGCGCCGGAGAAAGCAGCATCTCCTGCCGGAAGACCGGAAATGAAAGTGATCGCGAAGCCGGAGATTTCGGTCTCCGGCTACGACTCAAGCGACGAGTGTCTCAACCTCTCTTCTCCCACTTCGGTTCTCCGATACACCGAACCGGAGAAACCGGCCGAACCGCGCGCCGGTCGAACCGCACCTGCGGAAACCAACACGGTAGAAGAGTGTCAAGGCGAGACGGTGTCGTTTCACGAAAGTACGGAGTTTGTGCTACAGGACATGCCGTGGGATGATGTGTTTCATTTTCCAACGGCGCCGGAGTTTCCGGTTATGTTTGACGAGCCTGTTTTGTTCGACGAAACGACGCCGGTTTTGGTTAGTAACGGTTTCGGTGGTGTTATGGATTTTGAGGAAAAGTATTCGCAACCATCCACGTTGTGCCAAGTGGACGATTATTTCAATGACATTTTGTTAGGGTCAGATCCTCTGGTGGTTCTGTGA 996 0.5382 MEQQQQHQSILCKYTVHHSVTKKHTKSKNGARSPKVISISVTDPYATDSSSDEETEHVPRQRVRRYVNRIELQSSCETATSNLRKRPAGEAAGFRPPAKVSNSGTVKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAVVYDNAAIRLRGPDALTNFVTPPAKEAPEKAASPAGRPEMKVIAKPEISVSGYDSSDECLNLSSPTSVLRYTEPEKPAEPRAGRTAPAETNTVEECQGETVSFHESTEFVLQDMPWDDVFHFPTAPEFPVMFDEPVLFDETTPVLVSNGFGGVMDFEEKYSQPSTLCQVDDYFNDILLGSDPLVVL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2180 331 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Ssu6g2180 331 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Ssu6g2180 331 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Ssu6g2180 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 224 - -
Ssu6g2180 331 MobiDBLite consensus disorder prediction 79 102 - -
Ssu6g2180 331 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Ssu6g2180 331 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Ssu6g2180 331 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Ssu6g2180 331 MobiDBLite consensus disorder prediction 20 61 - -
Ssu6g2180 331 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
Ssu6g2180 331 MobiDBLite consensus disorder prediction 215 236 - -
Ssu6g2180 331 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Ssu6g2180 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 20 224 - -
Ssu6g2180 331 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2180 Ssu-Chr6 46295191 46296186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2180 12 330 AP2-EREBP Transcription Factor Family AT4G27950 38.375 2.44e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g2180 AP2 9.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2180 - - pvu:PHAVU_008G159400g 406.371