Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2173 ATGGAAACCCAGAAAAGTCCATTAGTGGATGACAGCTTATGTGATATTTTCAAAGACACAGAGTTTGGGGACACCCACTTTGGTGGAGGGGATCTCTTTGCCATTTTGGAGAGCCTAGAAGACGTGAACGATTTTCCTCCCATCAACAATGAAGCTATTACTAGCCCaacctcaaaagaaaataagcaaAACTCAAGAATGGTATCCCAAAAGTTCTCAATATCTTCACGTGCTCCAAGAGATTCCGAAACTGAGCCCGAAATCTCACCCAAAAGGAAGAGACAAAAGTTTAGCCCCACCTCGCCAGAGGAACCGCCGAGGATGTCTCACATAACCGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGAACTTGTCCGTCTTGAGGTCACTTATGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCAATAATTGGAGGTGTGGCTGATTACATCAACGAGTTGCAGCAGCTGCTACAATGCCTAGAGGccaagaaacaaagaaaagtttACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTGCCCATTAGTCCAAGGACACCACAACCAGGTAGCCCTTACAAGCCCAGGTTGCAGCAAGGTTACCTTTCCCCTACCATATCCAACTCTCCTACTTCTTCCGCTTCTTCTTCCATCAACGATAATATTAATGAGCTTGTTGCCAATTCCAAGTCCATTATCGCCGATGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTCTGAAGACTGTGTCACCACCAATTCCCGGACAGGCTCTGAAAATAATATCAGCCCTTGAAGACCTAGCACTCGAAATCCTCCATGTGAACATTAGCACAGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATATAA 945 0.4381 METQKSPLVDDSLCDIFKDTEFGDTHFGGGDLFAILESLEDVNDFPPINNEAITSPTSKENKQNSRMVSQKFSISSRAPRDSETEPEISPKRKRQKFSPTSPEEPPRMSHITVERNRRKQMNENLSVLRSLMPSFYVKRGDQASIIGGVADYINELQQLLQCLEAKKQRKVYSDVLSPRLVSSPRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPRLQQGYLSPTISNSPTSSASSSINDNINELVANSKSIIADVEVKFSGPHVLLKTVSPPIPGQALKIISALEDLALEILHVNISTADETMLNSFTIKI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2173 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 177 IPR036638 GO:0046983
Ssu6g2173 314 Gene3D - 100 170 IPR036638 GO:0046983
Ssu6g2173 314 MobiDBLite consensus disorder prediction 78 100 - -
Ssu6g2173 314 MobiDBLite consensus disorder prediction 48 77 - -
Ssu6g2173 314 MobiDBLite consensus disorder prediction 47 110 - -
Ssu6g2173 314 SMART finulus 111 162 IPR011598 GO:0046983
Ssu6g2173 314 MobiDBLite consensus disorder prediction 184 213 - -
Ssu6g2173 314 PANTHER TRANSCRIPTION FACTOR FAMA 10 314 IPR044283 GO:0003700|GO:0010052
Ssu6g2173 314 MobiDBLite consensus disorder prediction 220 239 - -
Ssu6g2173 314 CDD bHLH_AtFAMA_like 108 179 - -
Ssu6g2173 314 Pfam Helix-loop-helix DNA-binding domain 107 157 IPR011598 GO:0046983
Ssu6g2173 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Ssu6g2173 314 Coils Coil 149 169 - -
Ssu6g2173 314 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 10 314 - -
Ssu6g2173 314 MobiDBLite consensus disorder prediction 178 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2173 Ssu-Chr6 45987213 45988961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2173 15 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.282 4.48e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g2173 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2173 K20558 - gmx:100809717 476.863