Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2172 ATGGGAGACTGGGATTACAACAACCTCATGCACGAGCTGCGACAAGGCATGGAGCTCGCAAGGCAGCTCCAAATGTCTCTCCACGTGCTTTGTTCTTCCCAAGAAAGCCATGAGCTTCTGATCCAGAGGATCATAGCCGCGTTTGAAAGGGCACTTAAAATGGTGAACATGAAAATGGGGCTAGTGGGGAGGCCTTCTTCACAAATATTGCGCTCGATGGTGGCAATCCGAACGTCACAATCACCACCTTTGAGCGGAAGTCCTCGCAGTGAAAACTCAGACAAGGATCTGATGGAAATCAACCTTAGTTCCCCCAAAAAGAGGAGGACTATACCAAGCTGGACAAAAAAGATTCGAGTTAACCCGGGGATGGGAGTGGAAGGACCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGGCATACTTGGATCAAAGTATCCAAGAGGCTATTATAGATGTGCCCAAAGAAATGTTCAAGGCTGCATGGCCACAAAGCAAGTGCAAAGATCCGATCAAGACCCAACTATCTTTGAAATCATTTACCGGGGAAATCACACCTGCACAATGTCTTCCTATACGGTTCCTCCATCAGGACCccaagaaaaccaagaaccaaatTTGAGCATAATCCCACAGCAGCAAATTGAGCTCCAAAGTGCTCAGCAGCAACCTAGTGATCTACTTATGAACCTCCGTGCAGGGCTTAGAGTCCTAACAGAGAACCTAGATCAATCACATGCTTCATCATTCCATTATTTCCCATCAACTTCAACTATAAAAACGGAAGAGCAAGTCTTTCCTTCCCCAATGATTGATTACAACTTTGCTGAAAATTTTACTTGTCCTTCTTATGTGTCCCCTGCCGCATCTGACACAACCCACTTTTCAGTTTCTCCAAGTGGAGGAAACAGCTTTAGAGGGCACCCAAATTTTGCAAGTTCTGGAACTGAGATCAATGACATGATCTCAGCGGCTGCATCAGCTGCTAACTCTCCAGCACTTGTTGGCTTAGACTTCCCATTTGATCAGTTTCATATATTAGACGGCCAAAACTTCACCTTTGATAACCCACCattcatctaa 1092 0.4423 MGDWDYNNLMHELRQGMELARQLQMSLHVLCSSQESHELLIQRIIAAFERALKMVNMKMGLVGRPSSQILRSMVAIRTSQSPPLSGSPRSENSDKDLMEINLSSPKKRRTIPSWTKKIRVNPGMGVEGPLDDGYSWRKYGQKGILGSKYPRGYYRCAQRNVQGCMATKQVQRSDQDPTIFEIIYRGNHTCTMSSYTVPPSGPQENQEPNLSIIPQQQIELQSAQQQPSDLLMNLRAGLRVLTENLDQSHASSFHYFPSTSTIKTEEQVFPSPMIDYNFAENFTCPSYVSPAASDTTHFSVSPSGGNSFRGHPNFASSGTEINDMISAAASAANSPALVGLDFPFDQFHILDGQNFTFDNPPFI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2172 363 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2172 363 Gene3D WRKY domain 124 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2172 363 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2172 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 360 IPR044810 GO:0003700
Ssu6g2172 363 MobiDBLite consensus disorder prediction 77 102 - -
Ssu6g2172 363 MobiDBLite consensus disorder prediction 77 91 - -
Ssu6g2172 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 360 - -
Ssu6g2172 363 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2172 363 ProSiteProfiles WRKY domain profile. 125 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2172 Ssu-Chr6 45937615 45939178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2172 1 259 WRKY Transcription Factor Family AT4G23810 34.752 1.37e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g2172 WRKY 3.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2172 - - ccaj:109795434 516.538