Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2168 ATGCCTTTTGGTAGCCCAAACGAGAGTGAGCAACGAGACTTCATCTCTTCCTTCTCTTGCCGTAGCATCATCCCTCGCTCTCACCCTCACACTCGTGATATCACACATATTGATAAAGCACGAAGGTTCCCGAAGGAGGGCTGCGTCATCAAGAGCACCACCAGAGAAAGCGCCGCTTCTCAGCTTAAGGCCATCTGCGACGACATCGTTTCAGGCAAGGCCACCTTCGAGGACGTTGCCTCTCGCTTCAACGATTGCAGCTCTGCCAAGTGCGCCGTGATTTTGAAACTATATGATGAAGTAAGTCAGGTAGTGAATGATGCAGTAGGGAATATCAGAACCGTTGCCACTTTCTGTGCTGAAAAGGTGATGGAGTTATACCAGAAGAAATGTATAGGACCAATCCAGACAAGTATAAGGCAAGGTTTAGTCAGCGGAACAGTTGTAGCAATGTCACAATCTGGCTTCATGACCCCAGCTACGAGTAAAGCAAAAAATTCTGCTTCTTCTGTGTTTGCCATTCTTGATCAGAAATCAAGAATAGACCCCGGTGATGAATTCGGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTCCACCATATCACTTTCAAGTATTCAACCAGGCCTAATGTTCTTGTCTTCAAAGATCTTTCCTTGACCATTCATGCAGGAGAGTTGATGTGGTATCTTGGACCTCATGTTTACACCTCAGTTGAAAAATCTGCAGTAGCTTGTTAA 744 0.4556 MPFGSPNESEQRDFISSFSCRSIIPRSHPHTRDITHIDKARRFPKEGCVIKSTTRESAASQLKAICDDIVSGKATFEDVASRFNDCSSAKCAVILKLYDEVSQVVNDAVGNIRTVATFCAEKVMELYQKKCIGPIQTSIRQGLVSGTVVAMSQSGFMTPATSKAKNSASSVFAILDQKSRIDPGDEFGMTLQEVKGEIEFHHITFKYSTRPNVLVFKDLSLTIHAGELMWYLGPHVYTSVEKSAVAC 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2168 247 Gene3D - 188 228 IPR027417 -
Ssu6g2168 247 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 148 232 - -
Ssu6g2168 247 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 95 148 - -
Ssu6g2168 247 Gene3D ABC transporter type 1, transmembrane domain 96 156 IPR036640 GO:0005524|GO:0016021
Ssu6g2168 247 Gene3D ABC transporter type 1, transmembrane domain 160 187 IPR036640 GO:0005524|GO:0016021
Ssu6g2168 247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 148 232 IPR039421 -
Ssu6g2168 247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 95 148 IPR039421 -
Ssu6g2168 247 SUPERFAMILY ABC transporter transmembrane region 94 182 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2168 Ssu-Chr6 45822202 45825438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2168 102 234 Calmodulin-binding Proteins AT2G36910 26.257 1.70e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2168 K05658 - gmx:100777713 199.519