Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2163 ATGGAGTGCAACAAAGATGAGGCAGCTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGAAAGGGAATATGCTAGTGCAAAAAAGTTTGCTCTCAAGGCTCTAAATTTGTTTCCTGCTCTGGAGGGTCTTTCTCAGTTTCTAACAACTCTTGATGTTTATATCTCTGCcgagaataaaataaatggagAAATGGATTGGTATGGTATACTTCATGTGAGTCCATTTGCTGATGAAGATACAGTTAGGAAGCAGTACAGAAAGCTGGCTCTCACTCTTCACCCTGACAAAAACAAGTCTCCAGGTGCCGAAGGTGCTTTTAAGCTTGTTTCAGAGGCATGGAGTTTACTATCAGATAAGGTCAAAAGACTAGCATATAACCAGAACAGGAGTTCGGAAGGATTTCAGCATAATGCTCCCAACCATGTTGGGTCTCAATCAGAAGCACCCAGTTCAAATGGTTTTTATAATCTTAACAAGAATGCAACTTCAAGAGTGAGAACTGGACATAATGATGCTCGGGCACATCCAACCTCCATTCCTCCTCTGCACACAAAGGCTGGTACCTTTTGGACTATCTGTAATAGGTGCAGGACACATTATGAGTATCTCAGGATATATTTGAATCATACCCTTTTATGTCCCAATTGCAATGAAGCTTTTGTGGCTATAGAGAAAGGTCCGCCACCCAACGTTTTTAAGTCATCTAATTGGTCTTCTCGGCAACATCCTCAAAAGTCTTCTCGGCAGCATCCCAATGTTGGAAGGAATCACCCTGTGAATCCAGGAAGAACTGGTGTAGTTTCTCAAAATTTACAATCCAGCGGTCCTAAAGGCACATCTTTTAATACCACAAACTTCCAGTGGGGTCCTCACTCAAGAATGGCTGGTTTTGTTAGAAGAGATGGATCATCAACTGTTGCTGCTACAAATGTTAAGCAGCACTCAAGTGAAACAAGAAGAGAGGACGAGGGAGTCCCGTCAATTGCTGCATGGGAGAGGAGTCATGTGCATAAGAGGTCTGATGGTCCTTTTACTAATGTCGAAAGTCCTATGAAGAAAATAAGGACAGATGATATTTATATGTACAATGCAAATCATATGACCACAAGAGATGGCCCAAGTGGTTTTGGCCATTTTTATGAATCAGGAAAAGCTAACATGGGAACAGAAAGGACTCATGGTTTTTCAGGTGCTGCTAGCAAGCATTACAGCATGAGAGAGTTATCTTTGTTTGAATTACAAAATATGTTGATTGATAAGGCGCAGACTGAAATTCGCAAGAAACTTCAAGAATGGAGATCAATGGCTGAGGCTAAGATTTCAAACAAGGACAAAGGAAACAAGAGACAGAAAAGCACATTCAATGACAAAACAACTGGTCCAGAGAAGCATGGAGGTTCCACTATTAATGGTAACAGGCATGTGGACAGTGATTCTGCCCCAGTCACATCTGATGATACTGTAAAGGAGAAGCCAGCCTATGTTACAATCAACGTTCCAGATCCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAATTCCTTTGCAGAGGACCAGGTCTGGGCTGCTtatgataatgatgatggaaTGCCTCGCTATTATGCTAGAATTCACAAGGTGATTTCCACAAAGCCATTTAGAATGCGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGACTGGGTAGGTTCTGGTTTTTACAAAACTTGTGGGGATTTCAGGACTGGCAGGCATGAAATAACTGAATCATTAAATTCCTTTTCACATAAAGTAAGGTGGACAAAAGGCACCAGAGGAGTTGTTCGCATTTTTCCTGGGAAGGGGGAAGTCTGGGCTCTCTATAGAAACTGGTCTCCTGATTGGAATGAAAATACTCCAGATGAAGTTATACACAAGTATGATATGGTGGAAGTGCTTGAAGATTTCAATGAAGAGGAAGGTGTATTGGTCACACCACTTGTTAAGGTTGATGGTTTTAGGACTGTGTTTCTCAGTCACAGCCATGATCAGGCAAGAATGATTCCTAAAGGGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTACTTACTGGGCAAGAAGCTCATAATGCTCCAAAGGGCTGTCGAGAGTTGGATCCAGCAGCTACTCCCTTAGACCTCCTTCAGACAACAGCTAAAGCTAAGGAGGCATTGGATCATGTCAGACAAACGAAGGAAGACATGTTACCTGGATCACCTGAAAAACAAGCTGCTGGTAAGGGGGAGAATGCTTCAAAAACTAGTAGAGCAGATATGTTAGACGAGGATGCTAAACAGGTAAACTATGATAGATGA 2340 0.4141 MECNKDEAARAKEIAERKFSEREYASAKKFALKALNLFPALEGLSQFLTTLDVYISAENKINGEMDWYGILHVSPFADEDTVRKQYRKLALTLHPDKNKSPGAEGAFKLVSEAWSLLSDKVKRLAYNQNRSSEGFQHNAPNHVGSQSEAPSSNGFYNLNKNATSRVRTGHNDARAHPTSIPPLHTKAGTFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAIEKGPPPNVFKSSNWSSRQHPQKSSRQHPNVGRNHPVNPGRTGVVSQNLQSSGPKGTSFNTTNFQWGPHSRMAGFVRRDGSSTVAATNVKQHSSETRREDEGVPSIAAWERSHVHKRSDGPFTNVESPMKKIRTDDIYMYNANHMTTRDGPSGFGHFYESGKANMGTERTHGFSGAASKHYSMRELSLFELQNMLIDKAQTEIRKKLQEWRSMAEAKISNKDKGNKRQKSTFNDKTTGPEKHGGSTINGNRHVDSDSAPVTSDDTVKEKPAYVTINVPDPDFHNFDLDRAENSFAEDQVWAAYDNDDGMPRYYARIHKVISTKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGRHEITESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNENTPDEVIHKYDMVEVLEDFNEEEGVLVTPLVKVDGFRTVFLSHSHDQARMIPKGEMFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLLQTTAKAKEALDHVRQTKEDMLPGSPEKQAAGKGENASKTSRADMLDEDAKQVNYDR 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2163 779 MobiDBLite consensus disorder prediction 232 255 - -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 232 287 - -
Ssu6g2163 779 SUPERFAMILY Chaperone J-domain 58 126 IPR036869 -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 736 779 - -
Ssu6g2163 779 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 762 779 - -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 439 490 - -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 263 287 - -
Ssu6g2163 779 Gene3D DnaJ domain 63 174 IPR036869 -
Ssu6g2163 779 PRINTS DnaJ domain signature 102 122 IPR001623 -
Ssu6g2163 779 PRINTS DnaJ domain signature 86 101 IPR001623 -
Ssu6g2163 779 PRINTS DnaJ domain signature 68 86 IPR001623 -
Ssu6g2163 779 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Ssu6g2163 779 PANTHER HEAT SHOCK PROTEIN-LIKE 1 740 - -
Ssu6g2163 779 CDD DnaJ 66 119 IPR001623 -
Ssu6g2163 779 Pfam Domain of unknown function (DUF3444) 497 702 IPR024593 -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 439 459 - -
Ssu6g2163 779 Pfam DnaJ domain 66 127 IPR001623 -
Ssu6g2163 779 SMART dnaj_3 65 122 IPR001623 -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 460 479 - -
Ssu6g2163 779 MobiDBLite consensus disorder prediction 132 155 - -
Ssu6g2163 779 PANTHER BNAC03G44070D PROTEIN 1 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2163 Ssu-Chr6 45452069 45454408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2163 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.906 1.04e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2163 - - gmx:100792212 1315.83