Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2162 ATGGTATGCAGCAGTTGTGTGAGGTCTTTGGTTGTTCAAGCTGGAATCTTCGCCAACAGAGTGAAAATCAACGGCATTGGGAGGAGTTTGCAGGCAGTTCGGAGTTTTTCTTATTGGCCGATTCGTGAATACAAGACAATCATAGGGATGATGGTTGATACGGGTTCTATGTCAAGGGCCGGACCCCTTGTTGATATGATGCCAGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAAAGTGAAGATGGAAGACTTAGTTGTGGGTATTCAAGTTTTAGGGGGAAGAGAGTGACAATGGAggatttttatgatattaagaCATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGGTCATGGGGGCTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTCTTTGATAACCTCATGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTGATTTTCTGGATTCTGAAAAGGACACCTTCAGGGATGATGGATCTACAGCTTCAACAGGGGTTTTGGTTGATAACCATCTTTATGTAGCTAATGTTGGAGATTCCAGGACTATAATATCAAAAGCTGGTAAAGCAATTGCTCTTTCTGAGGATCATAAGCCAAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCCGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAATCGTATGTTGAAGCAGTTTGTTGTAGCAGAACCTGAGATCCAGGACCAGGAGATAGATGAACAAATTGAACTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACAGAAGAGGAGCCTGAGGCAGCTGCTCGAAAGTTAACAGAAGCAGCATTTTCTCGTGGTAGTGCTGATAACATTACATGCATTGTGGTGCGCTTCCATCATGACAAAACAGACCTAGCTAATCCTGACAAAGCAGAATCAGCTAGTGCTCAGCATGAGTAG 1071 0.4323 MVCSSCVRSLVVQAGIFANRVKINGIGRSLQAVRSFSYWPIREYKTIIGMMVDTGSMSRAGPLVDMMPEKDDDGRFASGGWKSEDGRLSCGYSSFRGKRVTMEDFYDIKTLKIGGQSICLFGIFDGHGGSRAAEYLKEHLFDNLMKHPKFLTDAKLAISETYQQTDADFLDSEKDTFRDDGSTASTGVLVDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQEIDEQIELLILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVRFHHDKTDLANPDKAESASAQHE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2162 356 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Ssu6g2162 356 SMART PP2C_SIG_2 87 335 IPR001932 -
Ssu6g2162 356 CDD PP2Cc 89 335 IPR001932 -
Ssu6g2162 356 ProSiteProfiles PPM-type phosphatase domain profile. 89 335 IPR001932 -
Ssu6g2162 356 Pfam Protein phosphatase 2C 91 328 IPR001932 -
Ssu6g2162 356 SUPERFAMILY PP2C-like 85 336 IPR036457 -
Ssu6g2162 356 PANTHER ALPHABET, ISOFORM E-RELATED 42 348 - -
Ssu6g2162 356 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 42 348 - -
Ssu6g2162 356 SMART PP2C_4 79 333 IPR001932 -
Ssu6g2162 356 Gene3D - 80 356 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2162 Ssu-Chr6 45329859 45346082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2162 1 356 PP2C-type Phosphatase Gene Family AT5G53140 69.293 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2162 K17506 - gmx:100813138 650.588