LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g2161	ATGAGTACTACACAGCAAGAGAAGTTTGTTAGGTTTCAGGATTGGAATTCAGTGAAGGGTTCTGAGAGCAATTATCCTGCAATTAAAATAACACACTCGGGGAGATTTAGAACTACATTAAGTTCAGTTTCTGAGAAGTTTCAAAACGGATTGGAATCTGGTTCTGAGAGGATAAAGAGATTCAGGACATCGTTCAAATCTTTTCCCTTTAGTAGTGGTCTTTCTAGAAGCTTTAGTTCTAGAAAGAAAATTCTTGATCCACAGGGTCCGTTCCTCCAAAAGTGGAACaagatttttgtattattatgtgTTATTGCAGTATCGCTGGATCCTTTGTTCTTTTATGTCCCAGTTATTGATGATGAGAAGAAATGTCTTTCACTGGACAACAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCtgatgttttttatataatccaCATGATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTgtcatcatttttcttaattgacaTTCTTGCTGTTCTTCCTCTCCCGCAGGTGGTGATTCGAGTTATCATTCCAGAGATGAGTGGTTTTAAATCACTTAATACAAAGAACTTGCTgaaatttgttgttttcttcCAATATGTGCCTCGTCTATTGCGAATAATTCCATTATATAGGGAAGTTACAAGGACCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTATACATGCTTGCAAGTCATACGTATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTGCTTCCTGATGGCCTGCGAGAGCGGATCAGACGATATGAACAATACAAATGGCAAGAAACCAGAGGTGTAGATGAGTACAATTTGATTCGCAATCTTCCCAAAGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGACCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGGGAAGGAGACCCGGTTGATGAAATGCTCTTCATAATGCGTGGCAAGCTATTGACCATGACAACTAACGGTGGAAGAACTGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGACTTCTGTGGGGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAAACCCTTTCAGAAGTGGAAACCTTTGCCCTAAAAGCTGATGACTTGAAGTTCGTGGCATCACAGTTTCGGCGCCTTCACAGTAAGCAGCTACGCCACACTTTCAGGTTCTACTCGCAACAATGGCGCACATGGGCTGCGTGTTTCATACAAGCAGCATGGCGGCGCTATAGTAAAAGGAAGCTTGAAGAGTCCCTCCTTGAAGAGGAGAATAGGCTGCAAGATGCATTGGCTAAAGAAGGTGGTAGCTCACCTAGCCTTGGTGCCACAATATATGCCTCAAGGTTTGCTGCTAATGCACTTAGATTGCTACGTCGTAATGGTACAAAGAAGGGTAGGGTGCCAGAGAGATTACCACCCATGCTACTTCAGAAGCCTGCAGAACCCGATTTTACTGCTGATGAGGAATATAGGGTGtga	1758	0.4164	MSTTQQEKFVRFQDWNSVKGSESNYPAIKITHSGRFRTTLSSVSEKFQNGLESGSERIKRFRTSFKSFPFSSGLSRSFSSRKKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDNKMEITATVLRSFSDVFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSFFLIDILAVLPLPQVVIRVIIPEMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYREVTRTSGILTETAWAGAAFNLFLYMLASHTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRERIRRYEQYKWQETRGVDEYNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVETFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLLEEENRLQDALAKEGGSSPSLGATIYASRFAANALRLLRRNGTKKGRVPERLPPMLLQKPAEPDFTADEEYRV	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g2161	585	Pfam	Cyclic nucleotide-binding domain	373	464	IPR000595	-
	Ssu6g2161	585	Pfam	Ion transport protein	95	272	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Ssu6g2161	585	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	272	580	-	-
	Ssu6g2161	585	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	7	271	-	-
	Ssu6g2161	585	Gene3D	Helix hairpin bin	279	344	-	-
	Ssu6g2161	585	ProSiteProfiles	cAMP/cGMP binding motif profile.	353	437	IPR000595	-
	Ssu6g2161	585	SUPERFAMILY	Voltage-gated potassium channels	86	271	-	-
	Ssu6g2161	585	Coils	Coil	505	525	-	-
	Ssu6g2161	585	Gene3D	Jelly Rolls	351	471	IPR014710	-
	Ssu6g2161	585	CDD	CAP_ED	353	484	IPR000595	-
	Ssu6g2161	585	SMART	cnmp_10	353	484	IPR000595	-
	Ssu6g2161	585	MobiDBLite	consensus disorder prediction	554	585	-	-
	Ssu6g2161	585	SUPERFAMILY	cAMP-binding domain-like	282	475	IPR018490	-
	Ssu6g2161	585	ProSiteProfiles	IQ motif profile.	489	518	IPR000048	GO:0005515
	Ssu6g2161	585	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	272	580	-	-
	Ssu6g2161	585	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	7	271	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g2161	Ssu-Chr6	45265681	45272858	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g2161	259	581	Ion Channels	AT5G53130	85.583	0.0	557

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g2161	K05391		-	gmx:100801032	587.8