Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g2154 | atgataattaagcGGAAGCTGAAATCCCAAATGCTGAGTCTGAAACGGCGGCGACTCGGCGACTTGGCGAGCGAGGACGACAAGTGCGCCAcggagaggaagaagaggaggaagacGAACGGGTACTGCTACCCTCTGAATCTCCTCGCCGGCGTAATTCCGGCGAGTTTTCGCGGGCTACTCAGCGTGTCGGAGAAAGGTTGCCACGTCGCGCCGAGCTCCAAGGGCGACCGCGGCAAGAAGAATGCTTCGCGGCCGCCGCTGGTGCGGACGTCGCGGGGGCGGGTGCAGGCGCTGCCGTCGCGGTTCAACGATTCGGTAATTGATGATTGGAGGAAGGACAGCAAGGTTGACTGTGAATTTGATGATGAATTTGAGACTGTGAAGAAGAAGTTGCATGGGAAAGGGAAGAGCAACAAGGCTCGTGGGTATTCTGCATTGTGTGAGGAGGTGCTGCATAAGAATTTTGATGCTGCAAGCAAGGGGTTTGGGGAATTGAGAGGCAATGAGGGCGTTttgaaggagaagaaagagGGGTTGTATGGACCAGAAGACTTTTATGCTGGGGATATAGTGTGGGCCAAGGCACGGAGGAAGGAACCTTTTTGGCCTGCGATTGTCATTGATCCTATGCGTCAGGCACCGGAGCTGGTTTTGAAGTCGTGTATTCTCGATGCTGCTTGTGTCATGTTTCTTGGGTACTCcgggaatgaaaatcaaaggGACTATGCGTGGGTCAAGTATGGGATGATTTTTCCATTTATTGATCATGTAGACAGGTTTGAGGGTCAGTCTGAATTGGGTTGCTATAATCCCTCTGAATTTCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTTACAGAGAAGTTGATAGCAGATATAAATGCAGCAGCTGGTAACACTGGTTGTGATGATTTTATACTGAAAGGCTTTCAGGAGGTCACTGCTTCAAACCAGAAAGCAGAATATCACTTTCTGAACCAGGATTTATTTGATAAGAAGAAAGACATGCGACCTTGTGAAGTATGTGGATTGGAGCTTCCCTTCAAAATgtcaaagaaaacaaaggatTTGACTCCCGGCCGCCGATTCCTATGTAAAACGTGTGCTAGGttaacaaaatcaaaacattaTTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGCGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTATGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGATCTGATTATTTCTGTCCTATGTGcaaaataaagtttgatttcGAGTTATCTGATTCAGATAAATCACAGCCAAAAATCAAatggaaaaaaaatggtggGCAGCTAGTGCTTCCAAACAAGGTTACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGCGAGACTAAAAAACAAGCACTTAGAGAATGGGAACGGCACACAGGGTCCAAATTTAGAAATTGGAGGACAAGTGTTCAGGTGAAAGGATCCATGCTATCGCTGGAAAAATGGATGCTGCAATTGGCTGAGTTTCATGCTAATGCTGTAGTTTCTGTGAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTTCTACAAGAGAAGTATGAGCCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGAttacaacaaaattatcatttgcaACAGatgCCAAATAGCTGTTCATCAAGAATGTTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGCTCTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTATCTTTTGCTAGTGACGAAAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCGTCGAATTCTTTTGTCAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGCATGGAGTTGCATTGTATGGAGAAAAATGGTAAACAGGCAACAAGAATGGTTTCTTATTGTGCCTACCACAGAGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGTGTCAAGGTTAATTTCATCTAAAAGAATAATGGTTGAAGACACTTCTCCTGCAGAGAACACTAGACATGAGCCATTCTCTGTTGCTAGGTGTCGTATCTTTCAAAGAACAAATCATACAAAAAAGAGAGCAGCAGATGAAGCCATTGCTCATCATGTGAAGGGTCACTATCATCATCCTTTAGATGCAATATGGAGTTTAAATGCATACAGAGTAGTAGACAAGCCTCCAGCGTTTTCTTCTTTTAGGGAACGCCTATATCATTTACAGAGAACTGAAAATGAACAAGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTCGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGCAGCATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTTTTCAAGATAAGTGAAGAAGTAGTAGTTGATGCGACTGATAAAGGAAATATAGCTCGGCTAATTAACCATTCTTGTATGCCCAATTGCTATGCAAGGATCATGAGTGTGGGTGATGATGAGAGCCGGATTGCACTAATTGCTAAGACTGATGTGTTTGCTGTTATGACTACTTGTTTGATCCTGATGAGCGAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCACCAAACTGCCGGAAATTCATGA | 3009 | 0.4167 | MIIKRKLKSQMLSLKRRRLGDLASEDDKCATERKKRRKTNGYCYPLNLLAGVIPASFRGLLSVSEKGCHVAPSSKGDRGKKNASRPPLVRTSRGRVQALPSRFNDSVIDDWRKDSKVDCEFDDEFETVKKKLHGKGKSNKARGYSALCEEVLHKNFDAASKGFGELRGNEGVLKEKKEGLYGPEDFYAGDIVWAKARRKEPFWPAIVIDPMRQAPELVLKSCILDAACVMFLGYSGNENQRDYAWVKYGMIFPFIDHVDRFEGQSELGCYNPSEFQMAIEEAFLADQGFTEKLIADINAAAGNTGCDDFILKGFQEVTASNQKAEYHFLNQDLFDKKKDMRPCEVCGLELPFKMSKKTKDLTPGRRFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGSDYFCPMCKIKFDFELSDSDKSQPKIKWKKNGGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCETKKQALREWERHTGSKFRNWRTSVQVKGSMLSLEKWMLQLAEFHANAVVSVKPKKPSLKERKQKLLTFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWLCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFQPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCMEKNGKQATRMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAVSRLISSKRIMVEDTSPAENTRHEPFSVARCRIFQRTNHTKKRAADEAIAHHVKGHYHHPLDAIWSLNAYRVVDKPPAFSSFRERLYHLQRTENEQVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVFAVMTTCLILMSEMNLKSLVYVKHQTAGNS | 1002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g2154 | 1002 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 625 | 744 | IPR013083 | - | |
| Ssu6g2154 | 1002 | SUPERFAMILY | Tudor/PWWP/MBT | 185 | 285 | - | - | |
| Ssu6g2154 | 1002 | ProSitePatterns | Zinc finger PHD-type signature. | 576 | 621 | IPR019786 | - | |
| Ssu6g2154 | 1002 | ProSiteProfiles | PWWP domain profile. | 188 | 257 | IPR000313 | - | |
| Ssu6g2154 | 1002 | CDD | PHD_TCF19_like | 382 | 432 | - | - | |
| Ssu6g2154 | 1002 | CDD | PHD_ATX3_4_5_like | 575 | 621 | IPR042011 | - | |
| Ssu6g2154 | 1002 | Pfam | PHD-zinc-finger like domain | 629 | 741 | - | - | |
| Ssu6g2154 | 1002 | SMART | PHD_3 | 686 | 742 | IPR001965 | - | |
| Ssu6g2154 | 1002 | SMART | PHD_3 | 575 | 622 | IPR001965 | - | |
| Ssu6g2154 | 1002 | SMART | PHD_3 | 381 | 433 | IPR001965 | - | |
| Ssu6g2154 | 1002 | Pfam | PWWP domain | 189 | 282 | IPR000313 | - | |
| Ssu6g2154 | 1002 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 627 | 742 | IPR034732 | - | |
| Ssu6g2154 | 1002 | Gene3D | - | 183 | 289 | - | - | |
| Ssu6g2154 | 1002 | SUPERFAMILY | FYVE/PHD zinc finger | 574 | 638 | IPR011011 | - | |
| Ssu6g2154 | 1002 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 998 | IPR025780 | - | |
| Ssu6g2154 | 1002 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 | 1 | 974 | - | - | |
| Ssu6g2154 | 1002 | Pfam | SET domain | 877 | 972 | IPR001214 | GO:0005515 | |
| Ssu6g2154 | 1002 | ProSiteProfiles | Zinc finger PHD-type profile. | 379 | 435 | IPR019787 | - | |
| Ssu6g2154 | 1002 | Pfam | PHD-finger | 588 | 622 | - | - | |
| Ssu6g2154 | 1002 | SMART | set_7 | 866 | 985 | IPR001214 | GO:0005515 | |
| Ssu6g2154 | 1002 | ProSiteProfiles | SET domain profile. | 866 | 984 | IPR001214 | GO:0005515 | |
| Ssu6g2154 | 1002 | SUPERFAMILY | FYVE/PHD zinc finger | 379 | 437 | IPR011011 | - | |
| Ssu6g2154 | 1002 | CDD | ePHD_ATX3_4_5_like | 630 | 741 | IPR041955 | - | |
| Ssu6g2154 | 1002 | ProSiteProfiles | Zinc finger PHD-type profile. | 573 | 624 | IPR019787 | - | |
| Ssu6g2154 | 1002 | Pfam | PHD-finger | 381 | 434 | IPR019787 | - | |
| Ssu6g2154 | 1002 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 376 | 436 | IPR013083 | - | |
| Ssu6g2154 | 1002 | MobiDBLite | consensus disorder prediction | 70 | 94 | - | - | |
| Ssu6g2154 | 1002 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 568 | 624 | IPR013083 | - | |
| Ssu6g2154 | 1002 | PANTHER | PHD FINGER PROTEINS | 1 | 974 | - | - | |
| Ssu6g2154 | 1002 | SUPERFAMILY | SET domain | 860 | 974 | IPR046341 | - | |
| Ssu6g2154 | 1002 | Gene3D | SET domain | 765 | 974 | IPR046341 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g2154 | Ssu-Chr6 | 44451387 | 44462589 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g2154 | 576 | 741 | C2H2 Transcription Factor Family | AT3G14740 | 33.333 | 1.08e-19 | 90.1 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Ssu6g2154 | zf-HC5HC2H_2 | 3e-27 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g2154 | - | - | gmx:100775276 | 1743.01 |