Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2152 ATGTTTGCAGAGACAGGTTTTCTCCTCCCATATTTTCGAAATTTCTCTCAAGAGTTTCAACAACTTGAGGAGTATTGCATGACTCAGAAGTCCAATGCTTCAATGAATGACCTTGTTCAATCTTCTTCTGCAATCTCAGAATATGATTTGTTAATAGAGGGAGATCTGTTCAAAGCACCTGAACCTATTATTGAAGAACCAACCATGGACCTTGATCCCATGCAAGCAGCCATCTCAATGACATCTTGTGGGGAGGATGTCTCCTCACAGGGTCTAAAATCATCAGATATTGATGTACTTCAAAATGAACAGATTCTGAGTGAGGTATTCTACGAGTGCAAAAAGGATCTCTTAGAAAAGACAGTGATAGAGTCATCACTCTCTGATATTATGGAAATCAGGGTTCCAGCTCTGAACATTGATGAGAATTCAATTCAAGAAAACAAACCACTTCTTGACATGCCTCTACCAAAAAGTATCAGTTCAGGAAGTCTGAGTTCAATGGACTGGATGCATGGTGCTGCAATGAAGCCTGCTTTCCTCGATTTCCCTGGAATAGATTTCAATGCAGTTTATGGCATGCGGAGAGCATTCAGCGAAGGGGATATAAAGACTCTCAGTAATGGCCACACGAACGTCGCCCAATCTCCCTGGGAGAGGCCTTTTCTTCTCAGCAACTGCACGAACGAGGAACGTCAAGAAAAGCTCTCCAGATATAGGAATAAGAAGACGAAGAGAAATTTCGGGAGGAAAATTAAGTATGCTTGCAGGAAGGCACTCGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAGACTGAAGAATCAGATGTCAAGAGGCAATGA 849 0.4229 MFAETGFLLPYFRNFSQEFQQLEEYCMTQKSNASMNDLVQSSSAISEYDLLIEGDLFKAPEPIIEEPTMDLDPMQAAISMTSCGEDVSSQGLKSSDIDVLQNEQILSEVFYECKKDLLEKTVIESSLSDIMEIRVPALNIDENSIQENKPLLDMPLPKSISSGSLSSMDWMHGAAMKPAFLDFPGIDFNAVYGMRRAFSEGDIKTLSNGHTNVAQSPWERPFLLSNCTNEERQEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEESDVKRQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2152 282 Pfam CCT motif 232 274 IPR010402 GO:0005515
Ssu6g2152 282 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Ssu6g2152 282 PANTHER CCT MOTIF FAMILY PROTEIN 26 280 - -
Ssu6g2152 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2152 Ssu-Chr6 44194928 44198426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2152 213 277 C2C2-CO-like Transcription Factor Family AT3G21880 46.154 9.62e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g2152 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2152 - - gmx:100814332 439.499