Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2148 ATGGGGAAAAAAGGAGGCAGCTGGTTCTCGTCGGTGAAGAAAGTTTTCAAGTCATCTTCGAAAGACTCGTCCCTGCCTGAGAAGAAGAAGGAAAACACACAGAAATTGCAACATGAAGTGCCAGAGGTGGTGTCTATAGAGCATTTTCCAGCAGAGAGTTCTCCAGATAATGTGACCAATGAAGAAAGTACCACATCAACGCCAGTGACTGAAGATAGAAGCCATGCCATTGCCGTTGCAGCAGCAACTGCCGCAGCTGCTGAAGCTGCTGTGGCGGCTGCTCAAGCAGCTGCAAGAGTTGTGAGATTGGCAGGCTATGGACGCCACTCCAAGGAAGAAAGAGCAGCAACGCTCATTCAATCATACTACAGAGGCTACCTAGCTCGACGTGCACTGCGAGCATTGAAGGGATTAGTGAGGCTGCAAGCACTGGTGAGGGGACACAACGTGCGGAAGCAAGCGCAGATGACGATGCGGTGCATGCAAGCACTGGTGAGGGTCCAGGCACGAGTAAGGGCTCGCCGACTCCAATTGAGTCACGTGGAGGAAAGAGAACAATATGAGAAGAAGGAAGAGCCCAAGCCCATGCCCATGAGCCCCATGAGAAGGACAGACATTAATGGTTGGGACAATAGGCATCAAAGTAGCCACAAAATTAAGGAAAACGATTTAAGGAAACATGAAGCTGTAATGAAGAGGGAGAGAGCTCTTGCATTCGCTTTCAACTATCAACAGCAGCAGAAGCAATTTTTGCAGCCAGACTCGAATGGTAACGACGATGAAGGAACCACCTATGAGCGTGAAAAAGCCCAATGGGGCTGGAACTGGTTGGAGCGTTGGATGTCATCCCAACCATACAATGTGAGAAACATGGGCCCGCGTGAGACCTCTTACATGACTCTTGCTTCTACAACATCAACTACCACAGATAACATGTCTGAGAAGACAGTGGAGATGGACATGGTTACAACTCCAGGCCCAACCAACGTCAGAAACATCAGTACCATGAACCAAGACTTTGTTGATTTAAGCCCAGTTTCCAATAGGCCCCATCAAATACCTCCCAGCCCAAATAGACCTAGCTATATGGCCCCAACTCAGTCTGCAAAGGCAAAGGTTAGGGCCCAAGGCCCATCTAAGCCTCGGGTTTCAACTGGGCTTCACTGGAATTTCTCAACGAAGGGAGGCTCTACCTGTGACTCGTCTAGCTCTGGTGGAGGAATTGCCGCTTACCAATTTCCAAGGAGCCCAGGCCCAAAAATTAATGGCATTCGTTCACAGTCTAGAAGGATTGTGGGTAGCAGTCCAGATTACATTGAGGATTGGGCCGTTCCACTTGGAGCCCATGGTTGGGCATAG 1359 0.496 MGKKGGSWFSSVKKVFKSSSKDSSLPEKKKENTQKLQHEVPEVVSIEHFPAESSPDNVTNEESTTSTPVTEDRSHAIAVAAATAAAAEAAVAAAQAAARVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHVEEREQYEKKEEPKPMPMSPMRRTDINGWDNRHQSSHKIKENDLRKHEAVMKRERALAFAFNYQQQQKQFLQPDSNGNDDEGTTYEREKAQWGWNWLERWMSSQPYNVRNMGPRETSYMTLASTTSTTTDNMSEKTVEMDMVTTPGPTNVRNISTMNQDFVDLSPVSNRPHQIPPSPNRPSYMAPTQSAKAKVRAQGPSKPRVSTGLHWNFSTKGGSTCDSSSSGGGIAAYQFPRSPGPKINGIRSQSRRIVGSSPDYIEDWAVPLGAHGWA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2148 452 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Ssu6g2148 452 PANTHER IQ-DOMAIN 5-RELATED 1 434 - -
Ssu6g2148 452 MobiDBLite consensus disorder prediction 182 201 - -
Ssu6g2148 452 MobiDBLite consensus disorder prediction 15 72 - -
Ssu6g2148 452 Gene3D - 110 160 - -
Ssu6g2148 452 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Ssu6g2148 452 MobiDBLite consensus disorder prediction 182 198 - -
Ssu6g2148 452 SMART iq_5 111 133 IPR000048 GO:0005515
Ssu6g2148 452 SMART iq_5 134 155 IPR000048 GO:0005515
Ssu6g2148 452 Pfam IQ calmodulin-binding motif 113 133 IPR000048 GO:0005515
Ssu6g2148 452 Pfam IQ calmodulin-binding motif 139 154 IPR000048 GO:0005515
Ssu6g2148 452 MobiDBLite consensus disorder prediction 20 37 - -
Ssu6g2148 452 Pfam Protein of unknown function (DUF4005) 345 385 IPR025064 -
Ssu6g2148 452 MobiDBLite consensus disorder prediction 52 72 - -
Ssu6g2148 452 PANTHER IQ-DOMAIN 21 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2148 Ssu-Chr6 43761072 43766291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2148 1 420 IQD Protein Family AT3G49260 49.783 6.75e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2148 - - gmx:100798026 650.973