Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2140 ATGGATGAACCGGGTGAGGAAGAAGAGTTCAGGAGGTGCAGCAGAAGGGCGTCAAAGGGGTGGAGGTGCAAGGAGAGGGCTGTGAGTGGAAGAAGCGTCTGTGAGAGGCATTATCTGTACATGCAGCAGAGAATCAAGAGTGTGAAGAAGGAAGGTGCTTCTGGGGATGTTGGTGTGCCCCAGAAAAGAAGaatgaaacaaagaaagaaacctCAAGGTGATTTGGAAAATGGGGTTGTGGGTGGTGGGGTTGTTGGTGACGGCGGTAGAGGGTTGTTTGATGGTCACAATGGTGGTCCCCATGTTGTTGTTGAGGAATTTGCTGGTCTTTTTGGTGAAGGGCATGATGGTGGGATGAATCTTGGTTTGGGTTGTGAAAGTTTTGAACTTTGGGGTGAAGGAGAGGGTCAACATGTTCATGTGGGTGGTTTTGGGGGAGGATGTGAGAATCTGGGTCAGGTTCTAGGTCAGCCACGGAGCAGTGGGAATGCTGGTGGGGTTTCTGATGCTGTTCAGGGAGGTCATGCAAGTGGGGCTGGTGTGGATgtttatgaaaatgattttcTGGGCCTTTCTTCTGAAGGCTTAGAAGGGCTAATGGCTGAAGCTGATTTTGATAGTCTATATGATCAGGGTTTTCAAGCTCTTCTTTGTCAAGGTGGGGGCTGTGAGGAAGATGTGATTTTCATTGGCTCTTATAGGGCCATGCCCAACTTTGCAGCTCCTGGTGGCACGGGGTTTGAGGGGTTGAGTGGCGAAAATGCATTTGAGTTCATAGGTGAAGAAGTTGCTGGGTCTGTGGGAAATCCAGGTGGGTATTGTAAAGTTGAAGGTGAAACTTTTGGTGGCATAGATGTACCTGGGTCAAATGGCAGGCACAACGGGGACAGTGGATCAAATAGCAAGATGATTGTTCTTGGTGTTGAAGAGGGAATGGAACGAGTATTAGATGGAGGAGTTGCCACCAGTGAAGAGGAAAAAGGTATAGCCTTCAGGCCAGTGGCTAGGAGAGGTAGGCCTAAATTTTCTGAGAATAACGATAAACAGGTTCACATCATTTTGAATGGACAAACTATTAGTGGAAATGATAAGGAAGGGATGAATAGTGTCACAGTTTTAGGGTCTGTCTCTAAGGCTGTTGATGAAGGTGCAGTCCTGGATAAGATTGTAAGGCCAATGAAGAGTGGTCAACCAAAGGATTCAACTGGGATGAGTAATGTCACAGTTTTTGAGTCTGTTTCCAAGGCTGGTGATGAAGGTGCTGACCTGGGTGAGATTGGGAGACCAAAGAAGCGTGGTCGACGAAAGGGTTCAAATAGGATGAGTAATGTCAGAGTTTTAGGGTCTGAAAGATCAGTGTTTTCTAGTGAGGAAGATAAGGCTGGTGATGAAGGTGCTGGCCTGGGTGAGATTGTGAGGCCAAAGAAACGTGGTCGACCACAGGATAATAGGATGAGTAATGTCGCAGTTTTAGAGTCTGAAAAATCAGTGTTTTCTGTTGAGGAAGATAAGGCTGGTGAAGAAGGTGCGGGCCTGGGTGAGATTGTGAGGCCAAAGAAGCATGGTCGACAAAAGGGTTCAAGTACGATGAATAATGTCGCAGTTTTAGTGTCTGAAAGATCAGTGTTTTCTGTTGAGGAAGATAAGGCCGGTGATGAAGGTATGGGCCTGGGTGAGATTGTGAGGCCAAAGAAGTGTGGTCAACCAAAGGTTTCAAATAGGATGAGTAATGTCACAGTTTTAAAGTCTGAAAGACCATTGTTTTCTGGCAAGGAAGATAAGAATGGTGAAGAAGGTGCGGTGGTTGAGCTTGTGAGGCCAAAAAATCGTGGTCGACCAAAGGGTTCAAATAGGATGTGCATTATCACAGTTTTAGAGTCTGAAAGTCCATTGATTTCTGGCGAGGAAGAAAAGGCTGGTGATGAAGATGCAGGCATGGGTGAGATTGAGAGGATAAAGAAGCGTGGTCAACCAAACGGTTCCgggaataaaaagaatattttgcaTGTAAGTAATGAATCTGTCCTCAAGATTGCAGGACCCAAGAAGCTTGGTCGACCAAAAGGctcaaaaggaagaaagaagagtGTTGTGTTGGTTGGTAATGAAGTTGTTGGTGAGATTGCAGGACCTAAGAAGTGTGGCAGGCCAAAgggttcaaaaaataaaatgaagaatgttGTTGAGGTTGGTAATGAAGTTGTCCTCAAGATTGCAGGACCCATGAAGCTTGGTCAACAAAAAGGTTCAAATGGAAGAAAGAAGAGTGTTGTGTTGGTTGGTAATGAAGTTGTTGGTGAGATTGTTGAACCTAAGAAGCGTGGCAGGCCAAAGGgttcaaaaagtaaaatgatgAATGTTGTTGAGGTTGGTAATGAAGTTGCTGGTGCTGGTGAGATTGCTAGACCTAAGAAACGTGGTCGACCAAAAGgttcaacaaaaataaagaggaatacTATTGAGGTTAATAATGAAGTTGTTTGTGCTGGCGAGATCACAGGACTTAAGAAATGTGGTCGACCAAAAGGTTCAACAATGAAATGGTGTACTGTTGTGTGCGCTTCTAGTAATGAAGTGGCAGGTGAGATTgcagtatataaaaatatggcTGGAGAAGCTGGAAACAAGTTTGACAAGGGGGCAAAAAAGCGTGGCAGGCCAAAGATTTCTAAtagaaaggaaaaggagtttGCTTACCCTTTTGATTCACTGATTGAGGGACATGGTCTTGTAGCTGAGAATGAAGGAAGAACTTATGCTGAATCTCCCTCCATAGATGATATtgatcaaaagaaaagaaattatagcCAGCAAAGAAGTTTTAGAATTACAAGACAAACTACTAAGCAAAGCCAATCAAGGTGTCTAAAAGAACAGACGGCAGCTGGTGCTGCTATAGCAGATGAGAATGAGCCAAATGGTGTTATGCGCAGATCCACGACAAATGCGAGAGGACAACCcttacaaaaacataaaagtacTCGTTTCAGCAAAGTTTTGAGTAGGATTATGCCACAGAAGCATATACAGGAAGAATGCATTTCAATGCTAGAAGATCAAGTAAATGAGGTCAAGAAGTCAGATTTTCTCCTTGAATGCTCAGAGGATCCTggaaatgaaaagacaaaaagaacaGGATTGACTTGTAAAACCAGCAATGATCAGAGAAGGTCTAGTGAAAGACTGAAAGCATTGCTAGTTGATGACAATAATTTTCAGGGTGTTGGAGGGGAAGAAACTATATACCATGGATTGGAATCTTCAGCTTTGATGGGTGATACCAGAAAGAAAAAGGACGCAAGGACTTTAAGGTGCCACCAGTGCTGGCAAAAAAGTAGGAGTGGTATTGTCATTTGCACCGAGTGCAAGAGAAAGAGATATTGTTATGAGTGCATAACAAAATGgtACCCGGATAAAACTAGAGAGGAGATAGAGACTGCTTGTCCCTTTTGTCTTGGTAATTGCAACTGTCGATTGTGCTTGAAGGAGGATATATCTGTGACTGGGACTGGTGAAGCAGATACAGATGTCAAATTACAAAAGTTGTTTTACTTGCTTGACAAAATTCTGCCTTTACTCCAAAATATCCAATGGGAGCAGAGATCAGAATTGGAAGTAGAAGCTAGCATGCGCGGTTCACAACTGCTGGAAGAGGAAGTTGTGCAGTCGctaattgatgatgatgatcgtGTTTATTGTGACAACTGCAATACATCAATTGTCAACTTCCACAGAAGTTGTCCCAATCCTTATTGTCAGTATGATCTTTGTCTCACTTGTTGCATGGAACTAAGAAATGGACTTCATTGTGAAGAAATTCCTGCTAGTGGCAATGAAGGAATAGATGATACACCACCTGTAACTTCTGCTTGGAGAGCAGAGATAAATGGTGGGATTCCTTGCCCTCCAAAAGCTAGGGGAGGTTGCGGTACTACTATTCTTTCACTGAGGCGCCTTTTTGAAGCTAATTGGGTTGACAAATTGATTAAGAATGTAGAGGAACTTACTATCAAATATCAACCACCTAATATTGATCTATCTCTAGGATGTTCAATGTGTCACAGTTTTGAGGAACATGTAGTACAGAATTCTGTAAGAAAGGCAGCTTCCAGGGAAACCAGTCATGGTAACCTTTTGTACTGCCCAGATGCTTTCGAAATGGGAGACACAGAATTTGAGCATTTTCAAAGACACTGGATAAGAGGTGAACCTGTTATAGTTAGGAATGTTTTTGAAAAGGGTAGCGGCCTTAGCTGGCATCCAATGGTGATGTGGAGGGCTTTTAGGGGGGCAAAGAAGATATTAAAAGAGGAGGCAGCTACTTTTAAAGCCATTGACTGCTTGGATTGGTGTGAGGTTGAAATTAACATCTTTCGGTTCTTCAAAGGCTACTTGGAAGGTCGTAGGTACAGGAATGGATGGCCAGAAATGCTGAAGCTAAAGGATTGGCCTCCatcaaattcttttgaaaagtgtTTGCCAAGGCATGGCGCTGAGTTTATAGCTATGCTTCCTTATAGTGACTATACCCATCCCAAATCTGGTGTTTTAAATCTTGCCACAAAGCTTCCTGCTGTTTTGAAGCCAGATTTGGGCCCCAAAACATACATTGCTTATGGATCTTTGGAAGAACTAAGTAGAGGTGATTCTGTGACAAAACTACATTGTGACATTTCAGATGCgGTCAATATTCTGACACACACAGCTGAAGTAAAGACACCACCATGGCAACCtagaatcataaaaaaattacaggaaaaGTATGAAGCTGAAGATATGCGTGACCTCTATGGCAAGAACAATAAGGCAATTGGTTCACATGGAAGAAATCGTCAAAAGTGTCATGTAGGTATTACTAGGAATCCTAAAATCCCTGGAAAAGAAGTCACTTTTGGGAGAGACTCAACCTTGCTCGGCAGTCAAGGAGAAGAAGAGAAGCTTAATGAACAGCAAAGTAGACCCCTAAATTTGGGACAGTCAAGATCAGATAGGGAAGCTTGTGTTCAAGGATTCTCAGAATCTACcaaaagtaaattaagtttaaatgcTGGTGAGCAGGCAGTTCTCAATTTGAATTCAAGGCTTCAGCATTTTGATCTCAATAGTCATGATTCCAGTTGTATGTTTCCGGAAAAAGATAGTAAGTTGAGGCATTATAAAGTTAATAATGTTGAACAGTGGTGCTCATCATCAGGTGAGGGAGTTTCTTTACCTGAACATATGCAGTTTAAGACATGCACAAATGACGATTATGAAAAAGGAAGAATGTCTGGCATGCACCTAATTAAAGATAAGTTTTGCTCCATCAATGACCAATCTAATACATGTTCTGTATTTGTTGATTTGAACATCCCCACTCCACAAGTCAGGGTAAATCAGGAACATCAGAGAAATTACATTGAACAATCTGAGTCCAAAAGCAGACACATGCATTTTGAGGAGTTACCCTCCTACACTGGGAAGAATGTTTCTGATTTACTCTTCCCTCAGAAGCAGTATTCACATCACTATTTGTCTGTTTGTGGGAATGGGGCTGACAATACTAGCATTTTGCAAGTTGAGACAGATACAGATGGTGACTTCCCTCTTGATGAATCTCATGGACAAGATCCTGATAATGATATTGGAGGATATCCAAACACCAGTGAAGGCCATCAGCCTTGTACTGGAACAGAAGATACCAAATTTGTGAATGGATTGAATTCTTTAGTCCTGCCATGTTCAGACATTGATGTTGACAAAATAGAGTCAGTTAAAAATGACACATCAAGTAATAATTTCTGTCAAAATGATGATCATTTGGAGACTCAATATGGGAGTGCTGTGTGGGATATATTCCGTAGGCAGGATGTACCCAAGCTAACAGAGTACCTAAAGAAACACCACAGAGAATTTCGCCACATAAATAATCTTCCAGTAAACTCTGTGATTCACCCCATTCATGATCAGATCCTTTATTTAAATGAGAAGCATAAAAAGCAATTAAAGCAGGAGTTTGGTGTTGAACCTTGGACGTTTGAGCAACACCTTGGGGAGGCTGTTTTCATACCAGCAGGATGCCCACATCAAGTGAGAAATAGAAAGTCTTGCATAAAAGTGGCTCTGGACTTTGTTTCACCTGAGAATGTTCAAGAATGCATTCGATTGACAGAAGAATTTCGGTTACTTCCCAAGGGCCATAGATCTAAGGAAGATAAATTGGAGATAAAGAAGATGGCACTATATGCTGCTGATGTTGCAATAACCGAAGCTACTAAACTGATGAGAGGAAAATGA 6276 0.4054 MDEPGEEEEFRRCSRRASKGWRCKERAVSGRSVCERHYLYMQQRIKSVKKEGASGDVGVPQKRRMKQRKKPQGDLENGVVGGGVVGDGGRGLFDGHNGGPHVVVEEFAGLFGEGHDGGMNLGLGCESFELWGEGEGQHVHVGGFGGGCENLGQVLGQPRSSGNAGGVSDAVQGGHASGAGVDVYENDFLGLSSEGLEGLMAEADFDSLYDQGFQALLCQGGGCEEDVIFIGSYRAMPNFAAPGGTGFEGLSGENAFEFIGEEVAGSVGNPGGYCKVEGETFGGIDVPGSNGRHNGDSGSNSKMIVLGVEEGMERVLDGGVATSEEEKGIAFRPVARRGRPKFSENNDKQVHIILNGQTISGNDKEGMNSVTVLGSVSKAVDEGAVLDKIVRPMKSGQPKDSTGMSNVTVFESVSKAGDEGADLGEIGRPKKRGRRKGSNRMSNVRVLGSERSVFSSEEDKAGDEGAGLGEIVRPKKRGRPQDNRMSNVAVLESEKSVFSVEEDKAGEEGAGLGEIVRPKKHGRQKGSSTMNNVAVLVSERSVFSVEEDKAGDEGMGLGEIVRPKKCGQPKVSNRMSNVTVLKSERPLFSGKEDKNGEEGAVVELVRPKNRGRPKGSNRMCIITVLESESPLISGEEEKAGDEDAGMGEIERIKKRGQPNGSGNKKNILHVSNESVLKIAGPKKLGRPKGSKGRKKSVVLVGNEVVGEIAGPKKCGRPKGSKNKMKNVVEVGNEVVLKIAGPMKLGQQKGSNGRKKSVVLVGNEVVGEIVEPKKRGRPKGSKSKMMNVVEVGNEVAGAGEIARPKKRGRPKGSTKIKRNTIEVNNEVVCAGEITGLKKCGRPKGSTMKWCTVVCASSNEVAGEIAVYKNMAGEAGNKFDKGAKKRGRPKISNRKEKEFAYPFDSLIEGHGLVAENEGRTYAESPSIDDIDQKKRNYSQQRSFRITRQTTKQSQSRCLKEQTAAGAAIADENEPNGVMRRSTTNARGQPLQKHKSTRFSKVLSRIMPQKHIQEECISMLEDQVNEVKKSDFLLECSEDPGNEKTKRTGLTCKTSNDQRRSSERLKALLVDDNNFQGVGGEETIYHGLESSALMGDTRKKKDARTLRCHQCWQKSRSGIVICTECKRKRYCYECITKWYPDKTREEIETACPFCLGNCNCRLCLKEDISVTGTGEADTDVKLQKLFYLLDKILPLLQNIQWEQRSELEVEASMRGSQLLEEEVVQSLIDDDDRVYCDNCNTSIVNFHRSCPNPYCQYDLCLTCCMELRNGLHCEEIPASGNEGIDDTPPVTSAWRAEINGGIPCPPKARGGCGTTILSLRRLFEANWVDKLIKNVEELTIKYQPPNIDLSLGCSMCHSFEEHVVQNSVRKAASRETSHGNLLYCPDAFEMGDTEFEHFQRHWIRGEPVIVRNVFEKGSGLSWHPMVMWRAFRGAKKILKEEAATFKAIDCLDWCEVEINIFRFFKGYLEGRRYRNGWPEMLKLKDWPPSNSFEKCLPRHGAEFIAMLPYSDYTHPKSGVLNLATKLPAVLKPDLGPKTYIAYGSLEELSRGDSVTKLHCDISDAVNILTHTAEVKTPPWQPRIIKKLQEKYEAEDMRDLYGKNNKAIGSHGRNRQKCHVGITRNPKIPGKEVTFGRDSTLLGSQGEEEKLNEQQSRPLNLGQSRSDREACVQGFSESTKSKLSLNAGEQAVLNLNSRLQHFDLNSHDSSCMFPEKDSKLRHYKVNNVEQWCSSSGEGVSLPEHMQFKTCTNDDYEKGRMSGMHLIKDKFCSINDQSNTCSVFVDLNIPTPQVRVNQEHQRNYIEQSESKSRHMHFEELPSYTGKNVSDLLFPQKQYSHHYLSVCGNGADNTSILQVETDTDGDFPLDESHGQDPDNDIGGYPNTSEGHQPCTGTEDTKFVNGLNSLVLPCSDIDVDKIESVKNDTSSNNFCQNDDHLETQYGSAVWDIFRRQDVPKLTEYLKKHHREFRHINNLPVNSVIHPIHDQILYLNEKHKKQLKQEFGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVALDFVSPENVQECIRLTEEFRLLPKGHRSKEDKLEIKKMALYAADVAITEATKLMRGK 2091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2140 2091 Gene3D Cupin 1374 1627 - -
Ssu6g2140 2091 Gene3D Cupin 1904 2063 - -
Ssu6g2140 2091 Pfam JmjC domain, hydroxylase 1924 2037 IPR003347 -
Ssu6g2140 2091 PANTHER ENBP1 PROTEIN 653 2089 - -
Ssu6g2140 2091 SMART AT_hook_2 607 619 IPR017956 GO:0003677
Ssu6g2140 2091 SMART AT_hook_2 681 693 IPR017956 GO:0003677
Ssu6g2140 2091 SMART AT_hook_2 711 723 IPR017956 GO:0003677
Ssu6g2140 2091 SMART AT_hook_2 771 783 IPR017956 GO:0003677
Ssu6g2140 2091 SMART AT_hook_2 881 893 IPR017956 GO:0003677
Ssu6g2140 2091 SMART AT_hook_2 474 486 IPR017956 GO:0003677
Ssu6g2140 2091 SMART AT_hook_2 803 815 IPR017956 GO:0003677
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 1856 1891 - -
Ssu6g2140 2091 ProSiteProfiles JmjC domain profile. 1512 2054 IPR003347 -
Ssu6g2140 2091 ProSiteProfiles Zinc finger RING-type profile. 1105 1151 IPR001841 -
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 50 80 - -
Ssu6g2140 2091 SMART cupin_9 1493 2054 IPR003347 -
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 452 468 - -
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 420 468 - -
Ssu6g2140 2091 CDD cupin_RmlC-like 1978 2038 - -
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 1640 1662 - -
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 974 994 - -
Ssu6g2140 2091 MobiDBLite consensus disorder prediction 1875 1891 - -
Ssu6g2140 2091 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 1101 1165 IPR018866 -
Ssu6g2140 2091 ProSiteProfiles WRC domain profile. 7 51 IPR014977 -
Ssu6g2140 2091 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 653 2089 IPR045109 GO:0032454|GO:0033169
Ssu6g2140 2091 SUPERFAMILY Clavaminate synthase-like 1392 2082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2140 Ssu-Chr6 43048060 43059078 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu6g2140 JmjC 2.2e-19 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2140 K15601 - gsj:114384813 2914.79