Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2139 ATGGAGATGGACAGCATTGACTGTGTGTCATTCTCTGATGGCATGGATGACGATGAGATCCAACACCACACTCTGCATCCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTCGCAATGGCGGTgctaataacaataatgttatGGGAGCCACAGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTACCCCCCTATTCATCAGTGCCACAATGGGCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGCCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGTCTGGCATTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCACATTTAAGGGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGCTTTGGTCAATACTTTTGCCTTCACTTTGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAACGAGGCTCGGAACTACAGCTACAGTCTTGAGGTTGGGGCAAATGGCAGGAAACTCATTTGGGAGGGCACACCACGGAGTATTCGTGATAGCCACCGTAAAGTTAGGGATAGCCATGATGGTCTTATTATTCAACGGAACATGGCCTTATTTTTCTCTGGTGGGGATAAGAAGGAGCTGAAACTAAGAGTTACAGGAAGAATATGGAAAGAACAACAGAATCCTGATGCTGGGGTGTGCATACCAAATCTTTGCAGCTAA 987 0.4488 MEMDSIDCVSFSDGMDDDEIQHHTLHPHHHSEFSSNKPRNGGANNNNVMGATAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2139 328 SUPERFAMILY TRAF domain-like 119 311 - -
Ssu6g2139 328 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Ssu6g2139 328 SUPERFAMILY RING/U-box 54 108 - -
Ssu6g2139 328 CDD RING-HC_SIAHs 64 102 - -
Ssu6g2139 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 319 - -
Ssu6g2139 328 MobiDBLite consensus disorder prediction 26 46 - -
Ssu6g2139 328 CDD Sina 180 308 - -
Ssu6g2139 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 118 IPR013083 -
Ssu6g2139 328 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Ssu6g2139 328 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu6g2139 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 172 IPR013083 -
Ssu6g2139 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 307 IPR008974 GO:0005515
Ssu6g2139 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2139 Ssu-Chr6 42841976 42852946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2139 57 314 C3H Transcription Factor Family AT2G41980 81.783 2.57e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2139 K04506 - fve:101313744 647.891