Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2136 ATGGAATATGGGAAATTGGGACCCTCGGACCCCGGTGGCTCCTCACGCTGCTCCACCACTCCTCTCACCAAACAAACCCCCTCTTCTTCCTCCGCAAGCAGCAAAAAGAAGCTCATCATGCTCTCTCTCCTCGCCGCCGTCTTAATCGTCGCCGCGGCCATATCCGCCGCCCTCGTCACCGTCGTCCGCTCCCGCGCCTCAGGCAACCAAAACGGGTCCAACCTCGCCCGCAAGCCCACACAGGCAATTTCCCGAACCTGCAGCAAGACACGTTTCCCCACTCTCTGCATCAACTCCCTCCTTGACTTTCCTGGCTCCACCACTGCCTCGGAACAAGACCTCGTCCACATCTCATTCAACATGACCCTGCGCCACGTAAGCAGGGCGTTCTACGCCTCCAGTGGCCTCTCGTTCGCCGCCACAGAACCAAAGGTTCGTGCGGCGTACGACGATTGCCTGGAGCTATTGGAGGAGTCGATGGACGCGCTTGCACGATCCCTCGACTCCATCCTCTCGCCTTCGGCGTTATCCGGCAGTGGCGAGATCCGACCCGCCGCCATTGGATCCACCGAAGACGTGATGACGTGGCTCAGCGCCGCGCTCACTAATCAGGACACGTGTGCAGAGGGGTTCGAGGACACGAGCGGGAGCGTGAAGGACCAGATGGTTAATAACTTGAAGGACTTGTCTGAACTCGTGAGCAATTGTCTCGCGATATTTTCGGCGAGTGGAAGTGGCGATTTCTCGGGGGTGCCGATACAGAACAAGAGACGATtaatggaaaaagaagaagaagagaatgtTAACGGCGACATCTCGGGGAAATTTCCGAGATGGTTGAATAAACGAGATAGGAGATTGTTGAGTTTACCTGTGTCGGCGATTCAAGCAGATATAACAGTGTCCAAGAATGGTAACGGAACAGTAAAGACAATTGCCGAGGCGATTAAGAAAGCGCCAGAGCATAGTAGTCGCCGATTCGTCATTTACGTGAGGGCAGGAAgGTATGAGGAGAATAACTTAAAGATGGGGAGAAAGAAAACGAATGTGATGTTCATAGGGGAGGGGAAGGGCAAAACTGTCATTACAGGGAAAAAGAATGTGATAGATGGCATGACCACATTCCACACAGCATCCTTCGCTGCTAGCGGTGCTGGATTCATTGCACGAGACATCACGTTCGAGAACTATGCAGGACCGGCGAAGCACCAAGCGGTGGCTCTCCGTGTTGGAGCCGACCACGCGGTGGTGTACCGGTGCAACGTCGTGGGCTATCAAGACTCATGCTATGTGCACTCTAACCGTCAATTCTTCCGTGAATGTGACATTTATGGCACTGTAGACTTCATATTCGGCAATGCTGCCGTGGTTTTCCAAAAGTGCAACATTTATGCTCGTAAGCCTATGGCCCAACAGAAGAACACCATCACGGCCCAAAATAGGAAAGACCCAAATCAAAATACTGGTATATCCATGCACAATTGTCGGATTCTCCCTGCCCCGGATCTTGCCCCGGTTAAGGGCAGCATCCCCACCTATTTGGGCCGTCCATGGAAACTGTATTCTAGAGCCGTATACATGTTATCCTACATGGATGACCACATACATCCTCGTGGGTGGTTGGAGTGGAATGGAGACTTTGCTTTGGATACATTGTATTATGGTGAGTATATGAATTCTGGGCCGGGTGCGGCCGTGGGCCAACGGGTTAAATGGCCCGGGTACCGGGTCATTACCTCTACCGTAGAGGCGAATCGGTTCTCTGTGGCCCAGTTTATATCCGGGTCGGCCTGGCTACCATCCACCGGAGTGGCCTTTTCAGCCGGGTTATCCACATGA 1839 0.5275 MEYGKLGPSDPGGSSRCSTTPLTKQTPSSSSASSKKKLIMLSLLAAVLIVAAAISAALVTVVRSRASGNQNGSNLARKPTQAISRTCSKTRFPTLCINSLLDFPGSTTASEQDLVHISFNMTLRHVSRAFYASSGLSFAATEPKVRAAYDDCLELLEESMDALARSLDSILSPSALSGSGEIRPAAIGSTEDVMTWLSAALTNQDTCAEGFEDTSGSVKDQMVNNLKDLSELVSNCLAIFSASGSGDFSGVPIQNKRRLMEKEEEENVNGDISGKFPRWLNKRDRRLLSLPVSAIQADITVSKNGNGTVKTIAEAIKKAPEHSSRRFVIYVRAGRYEENNLKMGRKKTNVMFIGEGKGKTVITGKKNVIDGMTTFHTASFAASGAGFIARDITFENYAGPAKHQAVALRVGADHAVVYRCNVVGYQDSCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISMHNCRILPAPDLAPVKGSIPTYLGRPWKLYSRAVYMLSYMDDHIHPRGWLEWNGDFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEANRFSVAQFISGSAWLPSTGVAFSAGLST 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2136 612 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g2136 612 SMART PMEI_2 78 239 IPR006501 GO:0004857
Ssu6g2136 612 CDD PMEI-like_3 87 242 - -
Ssu6g2136 612 PANTHER PECTINESTERASE 23 610 - -
Ssu6g2136 612 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 240 IPR006501 GO:0004857
Ssu6g2136 612 SUPERFAMILY Pectin lyase-like 293 609 IPR011050 -
Ssu6g2136 612 ProSitePatterns Pectinesterase signature 2. 443 452 IPR033131 -
Ssu6g2136 612 Pfam Pectinesterase 298 595 IPR000070 GO:0030599|GO:0042545
Ssu6g2136 612 Pfam Plant invertase/pectin methylesterase inhibitor 82 239 IPR006501 GO:0004857
Ssu6g2136 612 MobiDBLite consensus disorder prediction 12 30 - -
Ssu6g2136 612 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 241 IPR035513 -
Ssu6g2136 612 Gene3D - 292 610 IPR012334 -
Ssu6g2136 612 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 243 IPR035513 -
Ssu6g2136 612 PANTHER PECTINESTERASE 23 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2136 Ssu-Chr6 42639190 42643010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2136 1 611 Carbohydrate Esterase AT5G53370 64.169 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2136 - - gmx:106796002 1076.62