Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2124 ATGGGTCGTTTATCAGAGTCGAAGTTGGTGCAAGAGTTGATTCTGTACGCAGCTAGCGCAGCACTGAGTTGCTTGGTCTTGTTCGTGGGCCTCCGACAGCTGGACCCGAATCGCGAGGCAACGAAGAAGGCCCTTCAGCACAAAAAGGAGATAGCCAAGCGCCTCGGTCGTCCTCTCGTTCAAACAAACCCTTACGAGGATGTCATAGCATGCGATGTTAGTAATCCTGACCACATTGATGTGGAGTTCAACTCTATTGGAGGACTGGAAACTATAAAGCAAGCTCTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCCGACTTGTTTTCTCATGGTAAGCTTCTTGGGCCACAAAAGGGTGTCCTGTTGTATGGACCACCTGGCACGGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGTGGCTGCTGTATTTAGCCTAGCTCATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACTACTGATCAGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGCCGTCTTCCTCAAGCATTTGAAATTGGTATCCCAGACCGAAGGGAGAGGGCTGAAATATTGAAGGTTATCTTGAAGGGTGAGAGGGTTGAAGAAAACATTGACTTTGACTATATAGCTTACTTATGCGAAGGTTACACTGGTTCGGATCTATTTGACCTCTGCAAGAAGGCTGCCTATTTTCCAATTAGAGAACTACTGGATGAAGAGAAGAAAGGGAGAAGTTCTTCTGCTCCTAGACCATTGTCGCAGTCAGACTTCGAAAGGGCCCTCACTACTTCACGGAAGACTACGGTTGCTGCAATTGAATACAATGGATTAAGTGCAGATACTCTAAGATGGACAGGGCACAGGGAACCAGGTGATTATCAGGTTCAAGCGGCAATCAATGAACTCTCCAAGTTTGTGGTTTCTCACATGATTAACCGCCAGCCAGATGCCAAAGATCTTTAA 1176 0.4558 MGRLSESKLVQELILYAASAALSCLVLFVGLRQLDPNREATKKALQHKKEIAKRLGRPLVQTNPYEDVIACDVSNPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVILKGERVEENIDFDYIAYLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGRSSSAPRPLSQSDFERALTTSRKTTVAAIEYNGLSADTLRWTGHREPGDYQVQAAINELSKFVVSHMINRQPDAKDL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2124 391 CDD AAA 116 251 - -
Ssu6g2124 391 SMART AAA_5 118 254 IPR003593 -
Ssu6g2124 391 Gene3D - 80 339 IPR027417 -
Ssu6g2124 391 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 2 348 - -
Ssu6g2124 391 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 348 - -
Ssu6g2124 391 Pfam AAA+ lid domain 274 310 IPR041569 -
Ssu6g2124 391 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Ssu6g2124 391 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Ssu6g2124 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 336 IPR027417 -
Ssu6g2124 391 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Ssu6g2124 391 Gene3D - 253 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2124 Ssu-Chr6 42028932 42043790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2124 39 326 Calmodulin-binding Proteins AT3G56690 33.562 1.53e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2124 K22530 - gmx:100791694 716.842