Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2122 ATGTTTGCAGTGGTAGAAATTGTTGATCACTTTCAATGGAGAGATGTAATAGCAATTTATATTGATGATGATTATGGAAGAAATGGGGTGGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTggtaaaatatcatataaagcACCATTTAGGCTTGGTAAAGTTATTTGGGAAGAAATAAACAGTGCATTATTTAAGATAGCTTTAATGGAATCAAGGGTAATAGTCCTTCACATATACCCTTCTTTTGGTCTACAAGTGTTGAATATGGCTCGGTCCCTTGGCTTGATAGGAACTAGTTATGTGCGGTTAGTCATAGATTGGCTTTCTACAGTACTAGATTCAAATCCATCATTGTTCACAACTCAAGCCATGAATGACATCCAAGGGGTCGTAAGGGGCATCTTGTCCACGTTCCAGAGGACTACAGTGCAGAAGACTGCATTGTAG 450 0.38 MFAVVEIVDHFQWRDVIAIYIDDDYGRNGVAALGDKLAEKRGKISYKAPFRLGKVIWEEINSALFKIALMESRVIVLHIYPSFGLQVLNMARSLGLIGTSYVRLVIDWLSTVLDSNPSLFTTQAMNDIQGVVRGILSTFQRTTVQKTAL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2122 149 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 133 - -
Ssu6g2122 149 SUPERFAMILY Periplasmic binding protein-like I 2 127 IPR028082 -
Ssu6g2122 149 PANTHER GLUTAMATE RECEPTOR 1 133 - -
Ssu6g2122 149 Pfam Receptor family ligand binding region 3 130 IPR001828 -
Ssu6g2122 149 Gene3D - 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2122 Ssu-Chr6 41548386 41550928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2122 1 132 Ion Channels AT3G51480 50.000 2.14e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2122 K05387 - gmx:100790502 218.394