Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2115 ATGTCCAAAATACCCTCCACCTTCCTCAAATTCCCACTCCATCTTTTCCTCTTCCTCACCCTCTCGCTACCCTCCCCCGTAATTTCGCAGGACCCAACAACCCTCCTCAACGTCAAACACCAACTCGGCGACCCGCAGTCCCTCCGATCATGGAACTCCTCGTCGCCGCCGTGCGCCTGGCCGGGAATTCGCTGCTCCGGCGGCGCCGTCACTGAGCTCCACCTCGCCGGAAAAAACATCTCTGGCCACCTCCCGGCGGCGATCTGCAACCTCACACAACTCACGGTGCTCAACGTCTCCGACAACAACATCGTCGGCGAGTTCCCAACGTTCCTATCCAACTGCTCCAACCTCAAACTCCTCGAACTCTCTCAGAACTACCTCACCGGTCCCATCCCAAACGACATTGCAAAACTCAAAACGCTAACGTACCTCGACCTCGGCGGGAACGAATTCTCCGGCGACCTTCCGGCGGCGATTGGCGCGCTCTCCGAGCTCCGAACGCTGCTCCTCTACGGGAACGAGTTCAACGGCACGTTCCCGAAGGAAATCGGGAACCTAAGGAATCTTGAGGTGTTAGGCTTGGCTTCTAACAACTTCGTTAACCAAACGACGCCGTTTGAGTTCGGGAACTTGAAGAACCTAAAGACCATGTGGTTGCCGTGGTGTAATTTAATTGGAACGATACCTGAAAGTTTCGCGAATCTTACTAGCCTTCAACGACTCGACATGTCGTTTAACCGTTTAACGGGGAATATTCCTAGCGGTTTGTTCGCGCTAAGGAACTTGCAGTTTTTGCTTTTGTACCATAACGGTTTATCGGGTGAAATACCCGTTCTACCCGGTTCTGTTCGGGCTTTTAATTTGAGCCAGATTGATTTGTCGATGAACAATTTAACCGGTTCGATCCCCGAAGAATTTGGAATGTTACAGAATTTGACAGTGTTGCATTTGTTTTCGAATCAGTTAACCGGTCAGATTCCGAGAAGTTTAAGCCTTACCCCAACGCTTACGGACTTTAAGGTTTTTGGGAACAAGTTAAATGGGACTCTGCCACCAGAACTTGGCCTATATTCTAAGCTTGAGTATTTTGAAGTTGGGGACAATGAATTTAGTGGCGGTTTGCCGCAACATTTGTGTGACGGTGGTGCCTTGAAAGGTGTGATTGccttttctaacaatttaagtGGGGAGTTGCCACGGTGGATGGGGAATTGTAGTTCGCTGAAAAGTGTTCAGCTTTACAATAACAATTTTTCAGGTGAGGTTCCGTTGGGTTTGTGGGGTTTGGAAAACTTAACGACCTTGATGTTGAGTAATAACTCGTTTTCGGGTCAGCTTCCGAGTGAGTTAGCTTGGAATTTGTCGAGACTAGAGATTAGAAACAATTTGTTTTCGGGTAAGATATCACTCGGGGTTTCTTCTGCGGTGAATCTAGCGGTTTTTGACGCGAGAGATAACGTGCTTTCGGGTGAAATTCCAAGGGCGTTGACGGGTCTTTCTCGGCTTAATACTCTTATGCTTGATGGTAACCAACTTTATGGTGAACTTCCATCGGAGATAATCTCGTGGGAATCGCTCAACACTTTGAGTCTTTCAAGGAACAAACTCTCTGGTCAGATTCCAGAAGCCATGTGTGATCTTCCTGATCTTATTTACTTGGACTTGGCTGAAAATAACTTATCCGGTGAAATCCCACCTCAACTTGGTACTTTGAAGCTTGTTTTTCTGAACCTATCGTCCAATCAGCTTTCAGGGAGTGTCCCTGATGAGTTTAACAACCTTGCATATGAAAACAGTTTCTTGAACAATACTGATCTCTGTGCTTATAACCCAAATCTCAACCTTTCGAGCTGCTTCACCAAAAAGTCTGCAACCTCCCAAAAGAAAAACTCTAATTCTTCCAAATACCTTGTCCTAATTCTTGTTCTCATCATTATTGTGTTGCTGGCCACTGCCTTCCTTGTCTTTTGTAAGGTTAGAAAGAACTGTGGCAAGAAGCACTGTGGGGGGTACCTTTCAACTTGGAAGCTCACCTCATTCCAGAGGCTGAACTTCACTGAAATGAACCTCTTCTCTAGTTTGACAGAGGAAAACCTCATAGGGAGTGGGGGTTTTGGGAGAGTGTACCGTGTTGCCACAGATAGGCCAGGTGAGTATGTTGCTGTGAAGAAGATATGGAATTGTGGGAACCTTGATGAGCGGCTGGAGAAGGAGTTTATGGCTGAGGTTGAAATTCTGGGCACCATTCGGCACTCCAATGTGGTGAAGCTTTTGTGTTGCGTTTCGAGTGAGAACTCGAAGCTTCTTGTGTATGAGTACATGGAGAACCAGAGCTTGGACAAGTGGCTTCATGGAAGGAAGAGAGTTTCAGGTAATGGGTTGAGTTCACCTAACAAGACTTGTTTGCTTTTGAAGTGGCCAACGAGGTTGAGGATTGCAGTTGGAGCTGCACAAGGGTTGTGTTACATGCACCATGAGTGCTCTCCTCCTATTGTACACAGAGATGTCAAGTCTAGCAATATATTGATGGATTCGGAGTTCAGGGCCAGCATTGCAGATTTTGGGTTAGCCAGGATGTTGGTAAAGCCAGGGGAGCCACGTACAGTGTCCAATATTGCAGGGTCTCTTGGCTACATTCCACCAGAATACGCCTATTCAACAAAGATTAATGAGAAGGCTGATGTATATAGTTTTGGGGTGGTACTCCTAGAGCTTGTAACCGGAAAAGAGCCTTATAGTGGAGGACAGCATACAAGCAACCTAGTAGATTGGGCGTGGCAGCATTATAGGGAAGGAAAGTGCCTCACTAATGCATTGGatgaagaaatcaaagaaacaaGTTGCGTGGAAGAGATGACCACCGTCTTTAAATTAGGCCTTGTTTGCACAAGCAGGTTACCCTCAAATAGGCCTTCCATGAAAGAGATTTTGCAAGTTCTTCGTGAGTGTTGTTGTCCTCCAAGTAATGGACGTAGGAGAGTAGGAATTGGATTTGATGTTGCTCTCCTTCATGGGGATACCACTTACATTTCTAGTTATAAGGATGGTAAAAAGGCTATAAGCGAAAATGAAGAAAGCTGCTTGTATAGCATGTAA 3099 0.4608 MSKIPSTFLKFPLHLFLFLTLSLPSPVISQDPTTLLNVKHQLGDPQSLRSWNSSSPPCAWPGIRCSGGAVTELHLAGKNISGHLPAAICNLTQLTVLNVSDNNIVGEFPTFLSNCSNLKLLELSQNYLTGPIPNDIAKLKTLTYLDLGGNEFSGDLPAAIGALSELRTLLLYGNEFNGTFPKEIGNLRNLEVLGLASNNFVNQTTPFEFGNLKNLKTMWLPWCNLIGTIPESFANLTSLQRLDMSFNRLTGNIPSGLFALRNLQFLLLYHNGLSGEIPVLPGSVRAFNLSQIDLSMNNLTGSIPEEFGMLQNLTVLHLFSNQLTGQIPRSLSLTPTLTDFKVFGNKLNGTLPPELGLYSKLEYFEVGDNEFSGGLPQHLCDGGALKGVIAFSNNLSGELPRWMGNCSSLKSVQLYNNNFSGEVPLGLWGLENLTTLMLSNNSFSGQLPSELAWNLSRLEIRNNLFSGKISLGVSSAVNLAVFDARDNVLSGEIPRALTGLSRLNTLMLDGNQLYGELPSEIISWESLNTLSLSRNKLSGQIPEAMCDLPDLIYLDLAENNLSGEIPPQLGTLKLVFLNLSSNQLSGSVPDEFNNLAYENSFLNNTDLCAYNPNLNLSSCFTKKSATSQKKNSNSSKYLVLILVLIIIVLLATAFLVFCKVRKNCGKKHCGGYLSTWKLTSFQRLNFTEMNLFSSLTEENLIGSGGFGRVYRVATDRPGEYVAVKKIWNCGNLDERLEKEFMAEVEILGTIRHSNVVKLLCCVSSENSKLLVYEYMENQSLDKWLHGRKRVSGNGLSSPNKTCLLLKWPTRLRIAVGAAQGLCYMHHECSPPIVHRDVKSSNILMDSEFRASIADFGLARMLVKPGEPRTVSNIAGSLGYIPPEYAYSTKINEKADVYSFGVVLLELVTGKEPYSGGQHTSNLVDWAWQHYREGKCLTNALDEEIKETSCVEEMTTVFKLGLVCTSRLPSNRPSMKEILQVLRECCCPPSNGRRRVGIGFDVALLHGDTTYISSYKDGKKAISENEESCLYSM 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2115 1032 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 18 996 - -
Ssu6g2115 1032 SMART LRR_typ_2 91 115 IPR003591 -
Ssu6g2115 1032 SMART LRR_typ_2 139 163 IPR003591 -
Ssu6g2115 1032 SMART LRR_typ_2 310 334 IPR003591 -
Ssu6g2115 1032 SMART LRR_typ_2 500 524 IPR003591 -
Ssu6g2115 1032 SMART LRR_typ_2 548 572 IPR003591 -
Ssu6g2115 1032 SMART LRR_typ_2 430 454 IPR003591 -
Ssu6g2115 1032 SMART LRR_typ_2 236 260 IPR003591 -
Ssu6g2115 1032 Pfam Leucine rich repeat 93 151 IPR001611 GO:0005515
Ssu6g2115 1032 SMART serkin_6 695 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2115 1032 ProSiteProfiles Protein kinase domain profile. 695 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2115 1032 Pfam Protein kinase domain 697 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2115 1032 SUPERFAMILY RNI-like 287 610 - -
Ssu6g2115 1032 Gene3D Transferase(Phosphotransferase) domain 1 775 988 - -
Ssu6g2115 1032 ProSitePatterns Protein kinases ATP-binding region signature. 701 725 IPR017441 GO:0005524
Ssu6g2115 1032 Gene3D Phosphorylase Kinase; domain 1 677 774 - -
Ssu6g2115 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Ssu6g2115 1032 Gene3D Ribonuclease Inhibitor 174 282 IPR032675 -
Ssu6g2115 1032 CDD STKc_IRAK 701 981 - -
Ssu6g2115 1032 Gene3D Ribonuclease Inhibitor 283 333 IPR032675 -
Ssu6g2115 1032 Gene3D Ribonuclease Inhibitor 334 455 IPR032675 -
Ssu6g2115 1032 Gene3D Ribonuclease Inhibitor 456 642 IPR032675 -
Ssu6g2115 1032 Gene3D Ribonuclease Inhibitor 27 173 IPR032675 -
Ssu6g2115 1032 SUPERFAMILY L domain-like 46 375 - -
Ssu6g2115 1032 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 18 996 - -
Ssu6g2115 1032 SUPERFAMILY Protein kinase-like (PK-like) 687 981 IPR011009 -
Ssu6g2115 1032 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2115 Ssu-Chr6 41163702 41167514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2115 22 983 Receptor kinase-like Gene Family AT5G25930 54.742 0.0 1023
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g2115 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2115 K00924 - gmx:100790817 1726.84