Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2098 ATGGGTACCAAGTGCAGACACGTTTTTGATAGATTACAGAGTTTTGCCACTTATTGGAAGAAAAGCAGCACGGCAACTGGCAGAAGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTCCAGTACGCCAGCACTCAATGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCCATCTTGATTGGTCTGCTCACTTTCCTGACGTGGCATTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTGGCGTATGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAGCTGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAGCCACAACAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGGGCTGTAACGTGGGCACTGTTTGCTAGTAAAAAAGCTCTCAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGACAATAATACCTTTTACATTTATTCTGATCTTGCAAATTACTCCATGGCAGCCAGTGGCTACAATGAGATCAATTCGCTTTCAACACATGAAGCTTGGAATGATAAAGACATTCATGGTAACAAGTCTGCAATTTGGTATCGCGAACCACTTGATCCTGTCAGTGGTGAGAAGATTGGAAAAGTAATGCCAATTACACCAGAAGACTCAATCAATATAGCTGGCCTATCCCAAGTACCTGATGGTGTAGCTTCGTGGCACGTTGCCGTGAGCAAGTTTACAGATTCACCATTGCTTTCTGCAGCATTGCCAGTTTGGGATTCTTCTAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGGCAGCTCATGAAAGAGTTAGTTGAGTTGCACAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTTTCAAATTCTACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTTCAAAAAACCTATGGGAACAATTTCCCTCAAAGTCATGAAGTTCATGTAGAGAATGTCAGGCTAGGCCGCCAACAATATTACATTGACTCATTTTTCCTAAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAACATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGCGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGTCACCTCGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCAGCAGTAATTGGGTTACTTGACATTCTTATATCGGATGACCATCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCCCTGCTCCGTctacttaataatattttggatCTGAGCAAGgTGGAATCTGGAAAACTGATTCTAGAAGATGCAGAATTTGATTTGGGACGGGAACTTGAAGGACTTGTAGATATGTTTTCTGTGCAGTGCATGAACCACAATGTAGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAgttcaaatttttgcaaatttgatcAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTATGAAAACTCAAATTCTTGCAGTGATAATACAAATTTTCCTCTAGAACAAAAGAAATCACGGTGTTCTCAAAAGACCAGAGCAAAGCAACATGAAAACCATGGAAAGAGGACCTCTAATAGAGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGCGATTATACTTGTGTCTCAGTGCACCTGTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTTAGTGGTACTGCTTGCACTACATGGCAACATGGGTCTATCAGTTACATCTAAGTGGTTACAGAAAAACGGAGTGGTCACTATGGAGGCTTCTGAATGGAATGGATTAACACAAATTCTGAGGGTACTCTTTCATGCAAGAAGTTCATCtcataaaaatgattttgatgcAAATTATTCAGTGCATGACAATTTAAAGTCAAAACTATTGAGCATCCAGGAATTGAGGAACCCAGTTTTTGTCATTGCTGTTGACATTGGGCTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTCAACTTTCTTCACAAATACTTTGGGAGAGCAAAATTTGTATGGATACTAAACCATGACTCCTCCAATACCATGAAGATGGAGCTTTGCAAGAAAGGAAATACACTGACAACGAACAAACCcctttacaaaacaaaaatgattcatattttggAAGCCATCATAAAGGAGAGAAATGATGacctacaaaagaaaaatatgactaCTCCAACAGCTACAGTGAAAGAGGGTGATTTGCATGAGGGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCAGATAGTTCTGACATATCTGAAATGGGTGGTTCCAATCTTGTTAGTGTCGGTGTGGATAAACAAAGGGAGAAAGTAGTGAGATCCGATCCATCATCACAACACCAGATAAATAACTTAGTTGGATCAACAAATGAATGTATGGAAGATAATAATCATAGGGAGGAAGAGTTATGTCAGAGCAGCCTCAACTCTAACGATGTCACTGCAAACACCACACCAAAATCACGCTCAACTGAACAAGCATCCTTTGCGACCGGAGCTCAAGGTGAAGATTCTGAATATGGTGAAACATGTAGGACCAGTAGCTCAAGTAGAGTAGCTAGTGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACCATAATGCTGGAAAAAATGGGAGCCATTGTTGTAGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTGAATGGCATGCCTGGTGTTGAAGATTGTAGAAGGGAGTCTCTCCTGAAGGAAAGAAACACAAGATCATCTGAAACTGAGATTCTCAGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACGAAAGCAATACGGAAATCAGAAGTGGGAACTGGCTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGCAGTCCACCATTCTTTCACTCACGAGAAGGACATCCTGA 3681 0.4026 MGTKCRHVFDRLQSFATYWKKSSTATGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITAAQVKLSQYVIRSHNNLATQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAASGYNEINSLSTHEAWNDKDIHGNKSAIWYREPLDPVSGEKIGKVMPITPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHEVHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDHLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLILEDAEFDLGRELEGLVDMFSVQCMNHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWYENSNSCSDNTNFPLEQKKSRCSQKTRAKQHENHGKRTSNRDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLCLSAPVDATEQHCQVDFANKGLVVLLALHGNMGLSVTSKWLQKNGVVTMEASEWNGLTQILRVLFHARSSSHKNDFDANYSVHDNLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSNTMKMELCKKGNTLTTNKPLYKTKMIHILEAIIKERNDDLQKKNMTTPTATVKEGDLHEGLEIDYTQCDVASSDSSDISEMGGSNLVSVGVDKQREKVVRSDPSSQHQINNLVGSTNECMEDNNHREEELCQSSLNSNDVTANTTPKSRSTEQASFATGAQGEDSEYGETCRTSSSSRVASGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGMPGVEDCRRESLLKERNTRSSETEILSCPPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMQSTILSLTRRTS 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2098 1226 SMART REC_2 1075 1218 IPR001789 GO:0000160
Ssu6g2098 1226 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Ssu6g2098 1226 MobiDBLite consensus disorder prediction 1017 1065 - -
Ssu6g2098 1226 Gene3D - 471 550 - -
Ssu6g2098 1226 CDD REC_hyHK_CKI1_RcsC-like 1077 1218 - -
Ssu6g2098 1226 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Ssu6g2098 1226 MobiDBLite consensus disorder prediction 1017 1046 - -
Ssu6g2098 1226 MobiDBLite consensus disorder prediction 646 664 - -
Ssu6g2098 1226 Pfam Response regulator receiver domain 1146 1216 IPR001789 GO:0000160
Ssu6g2098 1226 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Ssu6g2098 1226 Gene3D - 1055 1221 - -
Ssu6g2098 1226 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Ssu6g2098 1226 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Ssu6g2098 1226 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Ssu6g2098 1226 SUPERFAMILY CheY-like 1073 1224 IPR011006 -
Ssu6g2098 1226 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Ssu6g2098 1226 Gene3D - 551 749 IPR036890 -
Ssu6g2098 1226 ProSiteProfiles Response regulatory domain profile. 1076 1222 IPR001789 GO:0000160
Ssu6g2098 1226 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1223 - -
Ssu6g2098 1226 MobiDBLite consensus disorder prediction 644 664 - -
Ssu6g2098 1226 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1223 - -
Ssu6g2098 1226 SMART HKATPase_4 596 748 IPR003594 -
Ssu6g2098 1226 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Ssu6g2098 1226 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 550 IPR036097 GO:0000155|GO:0007165
Ssu6g2098 1226 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 745 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2098 Ssu-Chr6 40639926 40646859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2098 4 1226 Histidine Kinase Gene Family AT2G17820 63.651 0.0 1551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g2098 HATPase_c 5.9e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2098 - - gmx:100776856 2231.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2235 2 78800465 78807782 Ssu6g2098 6 40639926 40646859 PCT