Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2085 ATGGCGGAAGAGCGATTCACGGGCGTCGTCCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCAGATCCGACGGCTACCGCACCCTCCTCGAGGGCGATCGCGTCGAGTTCGCCATCGCCACTGGCGACAACGACAAGACCAAGGCCGTCGACGTCACCGGCATCGACGGCGCCCCTCTCCAGCCCCGGGCCGCCGCCGGCAACCGCGGCTCCGGCTACGGCTTCGGCGCCAGGCGCAATGGCGGCGGCGCCGCGGGCGGGGCCGCATGCTACCAGTGCGGCGACTTCGGCCACCTCGCCAGGGATTGCACCCGCGGCAGCAATTCCGGCGGCGGCGGCGGGTGTTTCAATTGCGGCGGGTTCGGCCACCTCGCGAGGGATTGCGTGCGCGGCGGAGGCAATCCCGCTGGCGGTGTCGGCGGCGGCGGAAGCGGATCTTGCTTCAGGTGCGGCGGATACGGACACATGGCGAGGGATTGCGCCACCGCGAAGGGTGGCAGTGGCAGCGGCAGCggcggtggcagtggtggtggttgtTTTCGGTGTGGGGAGGTTGGGCATTTGGCTAGGGATTGCGGCGTTGAAGGAGGGAGGTTTGGAGGTGGCAACAGTGGCGGCGGCGGCGGGGGAAAAAGCACGTGCTTTAATTGCGGGAAGCCGGGGCATTTTGCGAGGGAGTGCGTGGAGGCGTCTGGGTGA 750 0.66 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAAAGNRGSGYGFGARRNGGGAAGGAACYQCGDFGHLARDCTRGSNSGGGGGCFNCGGFGHLARDCVRGGGNPAGGVGGGGSGSCFRCGGYGHMARDCATAKGGSGSGSGGGSGGGCFRCGEVGHLARDCGVEGGRFGGGNSGGGGGGKSTCFNCGKPGHFARECVEASG 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2085 249 Pfam Zinc knuckle 230 244 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 Pfam Zinc knuckle 195 209 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 Pfam Zinc knuckle 131 145 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 Pfam Zinc knuckle 163 178 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 Pfam Zinc knuckle 106 121 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 ProSiteProfiles Zinc finger CCHC-type profile. 164 177 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 SUPERFAMILY Retrovirus zinc finger-like domains 182 209 IPR036875 GO:0003676|GO:0008270
Ssu6g2085 249 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Ssu6g2085 249 PANTHER COLD SHOCK PROTEIN 2 98 124 - -
Ssu6g2085 249 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Ssu6g2085 249 SUPERFAMILY Retrovirus zinc finger-like domains 96 147 IPR036875 GO:0003676|GO:0008270
Ssu6g2085 249 PANTHER COLD SHOCK PROTEIN 2 1 100 - -
Ssu6g2085 249 PANTHER COLD SHOCK PROTEIN 2 122 248 - -
Ssu6g2085 249 ProSiteProfiles Zinc finger CCHC-type profile. 231 244 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 ProSiteProfiles Zinc finger CCHC-type profile. 132 145 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 Gene3D - 91 125 - -
Ssu6g2085 249 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Ssu6g2085 249 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Ssu6g2085 249 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 SMART c2hcfinal6 230 246 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 ProSiteProfiles Zinc finger CCHC-type profile. 196 209 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 SUPERFAMILY Retrovirus zinc finger-like domains 150 182 IPR036875 GO:0003676|GO:0008270
Ssu6g2085 249 Gene3D - 1 82 IPR012340 -
Ssu6g2085 249 ProSiteProfiles Zinc finger CCHC-type profile. 107 122 IPR001878 GO:0003676|GO:0008270
Ssu6g2085 249 Gene3D - 126 155 - -
Ssu6g2085 249 Gene3D - 219 249 - -
Ssu6g2085 249 Gene3D - 191 215 - -
Ssu6g2085 249 Gene3D - 159 187 - -
Ssu6g2085 249 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Ssu6g2085 249 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Ssu6g2085 249 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Ssu6g2085 249 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 100 - -
Ssu6g2085 249 PANTHER COLD SHOCK DOMAIN PROTEIN 2 98 124 - -
Ssu6g2085 249 PANTHER COLD SHOCK DOMAIN PROTEIN 2 122 248 - -
Ssu6g2085 249 SUPERFAMILY Retrovirus zinc finger-like domains 213 245 IPR036875 GO:0003676|GO:0008270
Ssu6g2085 249 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Ssu6g2085 249 SMART csp_8 7 72 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2085 Ssu-Chr6 40128196 40128945 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ssu6g2085 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2085 K09250 - gmx:100806783 361.688