Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2076 ATGGCTTCATGCACCACGCTTTACGAGATTCTGGGACTCCGTGCTGCCGCATCCGGCGAGGAAATCAAGGCAGCGTACCGGCGATTGGCGAGGGTTTGCCACCCCGACGTGGTGCCGGTGGGCCAAAAGGAATCCTCTGCGTGGCGATTCATGAAGATCCATGCTGCGTACTGCACCCTATCGGATCCTGAGAAGCGTGCCAGCTATGATAGAAGCTTGTTCCGGCCTCAACGACCGCTCACAACGACGTCGTCGCAGTTTTCTGGGTACAGCGGTCGGAACTGGGAAACGGACCAATGTTGGTAG 306 0.5784 MASCTTLYEILGLRAAASGEEIKAAYRRLARVCHPDVVPVGQKESSAWRFMKIHAAYCTLSDPEKRASYDRSLFRPQRPLTTTSSQFSGYSGRNWETDQCW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2076 101 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Ssu6g2076 101 SMART dnaj_3 5 65 IPR001623 -
Ssu6g2076 101 Pfam DnaJ domain 7 70 IPR001623 -
Ssu6g2076 101 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 101 - -
Ssu6g2076 101 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Ssu6g2076 101 CDD DnaJ 6 62 IPR001623 -
Ssu6g2076 101 PRINTS DnaJ domain signature 8 26 IPR001623 -
Ssu6g2076 101 PRINTS DnaJ domain signature 26 41 IPR001623 -
Ssu6g2076 101 PRINTS DnaJ domain signature 45 65 IPR001623 -
Ssu6g2076 101 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 1 101 - -
Ssu6g2076 101 MobiDBLite consensus disorder prediction 79 101 - -
Ssu6g2076 101 Gene3D DnaJ domain 1 91 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2076 Ssu-Chr6 39859702 39860007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2076 8 70 C2H2 Transcription Factor Family AT1G74250 41.791 4.72e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2076 - - gmx:100795760 166.777