Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2072 ATGATCACAGCACCTTTTCCTACACCCACCGCCACTTTTTCCTGTAAAAGAGTCCCCTCGCCGCCGCGCCACGTCAGATTCCGGTCAATAGTGTCCTTCGCCACTGCGACAAAGGAGCAACAACGACACAGGCCACCTTCGTATCTGAGCCCTCACAGCATGGCTTCGTGCACCACGCTGTACGAGATTCTGGGAATCCGCGCCGCCGCGTCCTTCGAGGAAATCAAGGCGGCGTACCGACGACTGGCGAGGGTCTGCCACCCGGATGTGGCGCCGGTGGACCGAAAGGAATCCTCTGCGGGCGAGTTCATGAAGATCCATGCTGCGTACTGTACCCTATCGGACCCCGAGAAGCGTGCCAGCTACGACAGAAGCTTGTTTCGGCACCAGCCACCGCTCACAACGACGCCGTCGCGGTCTTCCGGCTACAGTGGTCGGAACTGGGAAACGGACCAGTGTTGGTAG 465 0.5978 MITAPFPTPTATFSCKRVPSPPRHVRFRSIVSFATATKEQQRHRPPSYLSPHSMASCTTLYEILGIRAAASFEEIKAAYRRLARVCHPDVAPVDRKESSAGEFMKIHAAYCTLSDPEKRASYDRSLFRHQPPLTTTPSRSSGYSGRNWETDQCW 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2072 154 Pfam DnaJ domain 60 123 IPR001623 -
Ssu6g2072 154 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 1 154 - -
Ssu6g2072 154 Gene3D DnaJ domain 48 141 IPR036869 -
Ssu6g2072 154 SMART dnaj_3 58 118 IPR001623 -
Ssu6g2072 154 MobiDBLite consensus disorder prediction 126 154 - -
Ssu6g2072 154 CDD DnaJ 59 115 IPR001623 -
Ssu6g2072 154 SUPERFAMILY Chaperone J-domain 53 131 IPR036869 -
Ssu6g2072 154 MobiDBLite consensus disorder prediction 128 154 - -
Ssu6g2072 154 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 154 - -
Ssu6g2072 154 ProSiteProfiles dnaJ domain profile. 59 126 IPR001623 -
Ssu6g2072 154 PRINTS DnaJ domain signature 79 94 IPR001623 -
Ssu6g2072 154 PRINTS DnaJ domain signature 61 79 IPR001623 -
Ssu6g2072 154 PRINTS DnaJ domain signature 98 118 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2072 Ssu-Chr6 39660020 39660484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2072 61 123 C2H2 Transcription Factor Family AT1G74250 44.776 3.91e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2072 - - gmx:100795760 228.024