Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2068 atggaggtTGAGCCGCAAATCTCGTATGATTTGAAATCAAATACTCACCTTCAGCCAGAGACTGTTGTTTCAGTTCAAAATGGGGATCGTGGTGTTTCCTCATCTGTTGCAAATGCTGTTAACCCACAGCAGCCAGCTACAAAAAAACCGACCAGGCAGTGGGCTGCGTGGACTCGACAAGAGGAGGAAAGTTTCTTCACTGCATTACGACAAGTCGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTCAGGCATTATTACTACCGGCTTGTGAGGCGGATGAACAAACTTCTTGGTCCAGGATTATGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCAcgaagatttaaaatatttttagaagccTTGGAGCACCAACTTTTGAAAGACCGGAAGAAGAATGTAAGGAAGAGATCCTTACAAGGGGGGAATTCTCTTCCTCCTGTTCCTACTGCAGTCCCAAATCAAAGTAGAGCATCAGGAAATGATGCACGTGCAGTTAAACTGGTTCTTGTTGAcagtcaaaatattttaaaattaggacCTTCAAAACCATCAATGAAGCGCAATGTAAACATGGGTGTTAGCCGTAGTAACACTAAGGGAGATTCAAATACCATGAAACCAACAAGGCAACGAAAGAAATCTGgtATGATTTCAACAGCTGCATATAGAAAATGGGAGAAGGCTGCAATTGCTGGTGTTTCTTTAGTTGCAGATGCTGCCGAGCATTTGGAGCGAGTTGCAACTGTTCAAGAGATTGAACAAGACCAGGAGAATCCAGGAGAAAAATGTTCTGATCCTGCTGATTATGTCCTGCCCTCTTTACCCACATGTccacaaaatcaatttgttgATAACCATGTGAATAATAGTATGAAACTTAAGCTCCAGTTATTCCCAATTGATGAACCTACTCGAAGGGCATTGGAAACAgATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGGAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAGCAGTTGGAGAATTAATGCTTTTTCCTTATGGTATTCAAAGGGAAAACTTGGTTAATTATCAGAGATGGACCCAGGAATCTACTCTTAGTGCAGCAGATATATATGCAATGATTGGAAGTCCACCCATATTCCGATTAAGGTATGGTTGGTTCTCCAATACTGAGCTTGGGTTATTAAATATGCGAGTGTCTGTAGCATCTGGTTGCATGCTCAGACAATCCAAAATTAGTGTGGACAATACTAAGGATCAGGTTGTGAATTCGGTTTCATTTCCTACGCCATCAACTAATACTCATTCCATGGAGCTCTCTGAAGATTGCAGAACATCCATGAACAGAAACCAAACTCTCGTCACTGCTTCAACTGATTTGCCTAATACTAGAGACAACAGTGTTTACCAGAATACAAGCGCTGAGGAATCTCATGATCCTACAGCCAATACATCATGGCATGGGAAAGATGTTAGGGATGGAGCTGTGACTACACAGTTGGAAGACATGGATGAGATGAAATTAAGCAGTGGAACAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCCAGGATCTCGAAGATAACTGCATCGATCCTCCTATTGCTAAGAATTGTCATGATGTTCAGCAAATTCCTTTTAGTAGTGATTCTTTTGATGCTGCTATTGCTGCTCACATATCTAGACACCAAGACAAGATGGGACAATCATCTCTGGCATCCCATATGTCTTCCATCTGGGATGCTGAAGAAACTTGTGatgcctttttatttaaaaaagatccTATTCTTCATGAAGATGGTCCTTGTTTATCTCCAGTTACTTCTTTAGAATCTGAGAAAATGATTCCTGAAAGAAGCTTTGAGAAATTGGATGAGCTGTCACCTGAGAAAGAGAGGCTTGTGGATGATTTTGCTCAAACAGACCCTATGCCTATGGACAGTGGCGAGTCTGATTCAGATATCCAGGACCATTTAGGAAAGGATTTTAGTGCTCTAGCAGATATGTATTggCCTGATTCCTTGGGACCGTTAGATTTGGATATACCATCAACTAAGTACCATAGCgaagatataatttttagtgATAGTCTTAGTGGACTGAATCGCTTGATAGCCAGCAGCCTGGATGCATTCCAGAATTGCTCCTTTTTTGGGCTTGACAAGAAGGAAGCACCATCAACAGTTGAGGCTCAAGAATCTGCCGCCCTTTCGGATTTTAAAATTGGAAGTGGTATCTGA 2403 0.3999 MEVEPQISYDLKSNTHLQPETVVSVQNGDRGVSSSVANAVNPQQPATKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRSLQGGNSLPPVPTAVPNQSRASGNDARAVKLVLVDSQNILKLGPSKPSMKRNVNMGVSRSNTKGDSNTMKPTRQRKKSGMISTAAYRKWEKAAIAGVSLVADAAEHLERVATVQEIEQDQENPGEKCSDPADYVLPSLPTCPQNQFVDNHVNNSMKLKLQLFPIDEPTRRALETDKHNPHLELTLSTRKKISSILEHLNRKWGNSSIAVGELMLFPYGIQRENLVNYQRWTQESTLSAADIYAMIGSPPIFRLRYGWFSNTELGLLNMRVSVASGCMLRQSKISVDNTKDQVVNSVSFPTPSTNTHSMELSEDCRTSMNRNQTLVTASTDLPNTRDNSVYQNTSAEESHDPTANTSWHGKDVRDGAVTTQLEDMDEMKLSSGTGLSAGEWADSLTNISVGDLLSGVSQDLEDNCIDPPIAKNCHDVQQIPFSSDSFDAAIAAHISRHQDKMGQSSLASHMSSIWDAEETCDAFLFKKDPILHEDGPCLSPVTSLESEKMIPERSFEKLDELSPEKERLVDDFAQTDPMPMDSGESDSDIQDHLGKDFSALADMYWPDSLGPLDLDIPSTKYHSEDIIFSDSLSGLNRLIASSLDAFQNCSFFGLDKKEAPSTVEAQESAALSDFKIGSGI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2068 800 Gene3D - 11 106 - -
Ssu6g2068 800 MobiDBLite consensus disorder prediction 221 249 - -
Ssu6g2068 800 ProSiteProfiles SANT domain profile. 57 103 IPR017884 -
Ssu6g2068 800 MobiDBLite consensus disorder prediction 165 192 - -
Ssu6g2068 800 CDD SANT 56 99 IPR001005 -
Ssu6g2068 800 PANTHER PROTEIN CRAMPED-LIKE 12 777 - -
Ssu6g2068 800 MobiDBLite consensus disorder prediction 171 192 - -
Ssu6g2068 800 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Ssu6g2068 800 PANTHER CRAMPED PROTEIN 12 777 - -
Ssu6g2068 800 SUPERFAMILY Homeodomain-like 49 103 IPR009057 -
Ssu6g2068 800 SMART sant 53 101 IPR001005 -
Ssu6g2068 800 MobiDBLite consensus disorder prediction 213 250 - -
Ssu6g2068 800 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Ssu6g2068 800 MobiDBLite consensus disorder prediction 464 522 - -
Ssu6g2068 800 MobiDBLite consensus disorder prediction 464 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2068 Ssu-Chr6 39525692 39532963 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2068 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2068 - - gmx:100798411 1417.91