Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2066 ATGGGAACCTGCTTTTCCGCCACCAAAGTCAGCGGCTCCAGCGGCAACGCCGTCACCGTCAACAAACACCGTAAGGGAGCCGCGAAGCCGAAGCCGAAGTCGGAGACGGTAACGGCGAACCCCCAACGGCACAAGGCGAGTTCGAAGCACGTGCCGTGCGGGAAGCGCACCGATTTCGGTTACGAGAAGGATTTCGACAAGTGTTACTCGCTGGGGAAATTGCTGGGACACGGCCAATTCGGTTACACCTACGTCGGAATCGACAAGGCCAATGGCGATCGCGTCGCCGTTAAGAGGCTCGAGAAGAGTAAGATGGTTCTGCCTATTGCCGTCGAGGATGTTAAGCGAGAGGTGAAGATATTGAAAGCACTTGCTGGCCACGAGAATGTGGTTCAGTTCTATAATGCTtttgaaaatgattattatGTGTATATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGaattttcttttcaaatcaaccaaaaaaaattcacctTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgAAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGCAAGTCAGGCCCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGCTGTGTGGGAGACGCCCATTTTGGGATAAGACGGAGGATGGTATCTTCAAGGAGGTCTTACGTAAGAAGCCTGATTTCCGTCAGAAACCATGGCCAACTATTAGTAATGCTGCAAaagattttgtgaaaaaattactgGTAAAGGATCCTCGGGCAAGATTAACTGCTGCTCAAGCTCTATCACATCCATGGGttagagaaggaggagaagcATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAGTATAGTAGATTGAAACAATTTGCACTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATCTCAAAGATCAATTTGACGCTATAGATGTGGACAAAAATGGTTCTATTAGCCTGGAAGAGATGAGACAGGCTCTTGCCAAAGATCTTCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGATGGCAACACTGATGGGCTAGTGGATTTCCGTGAGTTTGTAGCGGCTACATTACATGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCGGCAACAGTCACAGGCTGCTTTTGAGAAATTTGACATAGATAAAGATGGCTATATTACTCCGGAGGAACTTAGAATGCATACGGGCTTGAGAGGCTCCATTGATCCTTTGCTTGAGGAAGCTGATATTGACAAAGATGGAAAAATCAGCCTACCGGAGTTCCGCAGACTTCTAAGAACTGCAAGCATGGGTTCTCGAAAGGTTTCAAGCCCATCTGGCTGTCAGCGGAGGATCTAG 1590 0.4428 MGTCFSATKVSGSSGNAVTVNKHRKGAAKPKPKSETVTANPQRHKASSKHVPCGKRTDFGYEKDFDKCYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKALAGHENVVQFYNAFENDYYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKKNSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFRQKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKYSRLKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDGNTDGLVDFREFVAATLHVHQLEEDSDKWRQQSQAAFEKFDIDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASMGSRKVSSPSGCQRRI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2066 529 ProSiteProfiles EF-hand calcium-binding domain profile. 488 515 IPR002048 GO:0005509
Ssu6g2066 529 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Ssu6g2066 529 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Ssu6g2066 529 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Ssu6g2066 529 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2066 529 SUPERFAMILY EF-hand 358 511 IPR011992 -
Ssu6g2066 529 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Ssu6g2066 529 Pfam EF-hand domain pair 376 438 IPR002048 GO:0005509
Ssu6g2066 529 Pfam EF-hand domain pair 454 509 IPR002048 GO:0005509
Ssu6g2066 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 519 - -
Ssu6g2066 529 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Ssu6g2066 529 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2066 529 CDD STKc_CAMK 69 328 - -
Ssu6g2066 529 Pfam Protein kinase domain 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2066 529 SMART efh_1 413 441 IPR002048 GO:0005509
Ssu6g2066 529 SMART efh_1 454 482 IPR002048 GO:0005509
Ssu6g2066 529 SMART efh_1 376 404 IPR002048 GO:0005509
Ssu6g2066 529 SMART efh_1 484 512 IPR002048 GO:0005509
Ssu6g2066 529 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Ssu6g2066 529 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 25 519 - -
Ssu6g2066 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Ssu6g2066 529 Gene3D Phosphorylase Kinase; domain 1 62 154 - -
Ssu6g2066 529 MobiDBLite consensus disorder prediction 1 51 - -
Ssu6g2066 529 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Ssu6g2066 529 SUPERFAMILY Protein kinase-like (PK-like) 56 359 IPR011009 -
Ssu6g2066 529 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2066 529 Gene3D - 349 508 - -
Ssu6g2066 529 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Ssu6g2066 529 Gene3D Transferase(Phosphotransferase) domain 1 155 348 - -
Ssu6g2066 529 Gene3D - 370 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2066 Ssu-Chr6 39475819 39488707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2066 1 524 EF-hand Containing Proteins AT2G17890 75.132 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g2066 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2066 K13412 - gmx:100798941 989.564