Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2055 ATGGGACGCGTGATCCGTGCGCAGCGTAAGGGTGCTGGCTCCGTCTTCAAGTCTCACACGCACCACCGCAAAGGGCCGGCTCGGTTCCGCAGCCTCGACTTCGGAGAGCGGAACGGGTACCTGAAGGGCGTGGTGACGGACGTGATCCACGACCCGGGCCGCGGCGCCCCGCTGGCGAAGGTAACGTTCCGGCACCCCTTCAGGTACCAGAAGCAGAACGAGCTCTTCATTGCCGCCGAGGGTTTGTACACCGGCCAGTTCATCTACTGCGGCAAGAAGGCCACCCTCGTCGTCGGTAACGTCCTGCCCCTCCGCTCCATCCCCGAAGGCGCCGTCATCTGCAACGTCGAGCACCATGTTGGAGACCGCGGCGTCTTCGCTAGGGCCTCCGGTGACTACGCCATCGTCATCAGCCACAACCCTGATAATGACACCACTAGGATTAAGCTTCCCTCTGGTGCAAAGAAGATTGTTCCAAGTGACTGTAGGGCCATGATTGGGCAAGTTGCAGGTGGGGGCAGAACTGAGAAGCCTCTTCTTAAGGCTGGAAATGCTTACCACAAGTTTAGGGTGAAGAGGAATTGCTGGCCGAAGGTGCGTGGTGTTGCCATGAACCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGACATGCCAGTACTGTCAGGCGTGATGCTCCTCCTGGACAAAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTGCTAAGGCTGATAAGGGTGCTTAG 786 0.5852 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYQKQNELFIAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTTRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2055 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Ssu6g2055 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Ssu6g2055 261 PANTHER RIBOSOMAL PROTEIN L2 1 259 IPR002171 GO:0003735|GO:0005840|GO:0006412
Ssu6g2055 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Ssu6g2055 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Ssu6g2055 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Ssu6g2055 261 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g2055 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Ssu6g2055 261 MobiDBLite consensus disorder prediction 210 230 - -
Ssu6g2055 261 Gene3D - 90 169 IPR014722 -
Ssu6g2055 261 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Ssu6g2055 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Ssu6g2055 261 PANTHER 60S RIBOSOMAL PROTEIN L8 1 259 - -
Ssu6g2055 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Ssu6g2055 261 Gene3D - 1 86 IPR012340 -
Ssu6g2055 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2055 Ssu-Chr6 39079311 39081217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2055 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 0.0 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2055 K02938 - gmx:100802137 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2383 2 81427052 81427816 Ssu6g2055 6 39079311 39081217 PCT