Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2053 ATGACGCGCGCGAGGAAATCCAACAGGGTTTCGTGGGCTACCGGAGGGAACCTGTGTCAGGTAAAATTGTTCTTGTCTGAGGATTACCCCTCGAAAGTTGGCCAGAAATCACAAGATCATCTTCAAGCAAAGACGTCATCAATGTTACATTCTAGTATTAATGAACCTAATGATTTACCCCCTGGGTTTGAAAGCAGTCATTTCCTAAACCAATCGAAGGTTGAATTTTCCTACATTTCCCAGATAAAATGGGAATGCCCTCCGCCGTTTATTGCCAATTCTCATTGGCGTGTTGCAGTCGGTGAGGAAAGTAGGGAGAAAGAGGATCAGAAACTGAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGATGTAGAAGAGGAAGATTATGATGATAAAATTACTCCTCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTATGGATATTTTGCCTGAATTTTCAGTAGCAGTGAACCCTTCCCCCATTGTGCAGTCACAGAACTCTCAGCAATATATATCTGCAACAACTTCCAGTAGTTCAGCCTCTAACGCATCTCATACAGTTTCCTTGGATACCTGTATAAGGCCCTTAGCTGGGGTATCTTCTGGTTTGGAAGCAGATTTAGCAGCAGCCTCTTCTGTTGTAGCAACCATCATGAAGAGTAATGAGCAAGGATGCCTGATTGATATGGATTTActggttaaaatatttaacgatCCAAAAATGTTTGAGAAGTTGATTAATGAACATAGAACTGCAGCCACCACTGTAAGTGCTTCCTCAAATACTGTGGATATTCCCACTTCTGGTGTGAAACCTGCTATTCCATCAGTTCTGTTGTCTACATCTACACCCGATGTGACAGCTTCTGGGACTGCACCTACAATTACAGTGGGTTTATTGCCTTCTGGGTTGAAGCCTGCAAAGCCATCAGTTTCATTATTGAATCCTACACCTGATAAGCCAGCCACTCTGTCAACGCCTGCAATTCCATCAGTTTCACTATTGTCTTCTACACATGATAAGCCAGTGGCTGCATCAGTTCCGTTGTCTAGGCCTGTATCTGGTAAGCCAGTAACACCCTCAGTTTCATTGCTTACACATACATCTGCACCTCATATGCACAGGTCTGTCAGCAAAAATTTTCACCATGTGTCAAGTGGAATGTCCCCTGCTTTGAATACCCAGTCTCAGCAAGATACAGCTCTGGTATCTGGGCCAAAGCGAGCTACATCAGTGCTGTCCATCTCTTCTAGTGAATTAAGCTCAGGCCCATTGCCATCTGCTACTGGGAACTTGCATGCAGTTGTGAATCAGGTGCAGTCCACTGCTAGTGCAATGCCTTATAAACTAAGTACAGGTTCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACACGGTGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAACATTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAGGGGGTGCCGAAATGGTGCCAATTGCCCCTATCAGCATGATGTTTCAGTTCAGTGGGGAGCTGGTAACGTCTTAGGGGCAGAGAGTGCAAAAAGATTGAAATTGGGACCAGAAATTTAG 1722 0.4338 MTRARKSNRVSWATGGNLCQVKLFLSEDYPSKVGQKSQDHLQAKTSSMLHSSINEPNDLPPGFESSHFLNQSKVEFSYISQIKWECPPPFIANSHWRVAVGEESREKEDQKLREMRVLEAVYPRLSAIPPSPSVSLDVEEEDYDDKITPLIPIIPIEEEESMDILPEFSVAVNPSPIVQSQNSQQYISATTSSSSASNASHTVSLDTCIRPLAGVSSGLEADLAAASSVVATIMKSNEQGCLIDMDLLVKIFNDPKMFEKLINEHRTAATTVSASSNTVDIPTSGVKPAIPSVLLSTSTPDVTASGTAPTITVGLLPSGLKPAKPSVSLLNPTPDKPATLSTPAIPSVSLLSSTHDKPVAASVPLSRPVSGKPVTPSVSLLTHTSAPHMHRSVSKNFHHVSSGMSPALNTQSQQDTALVSGPKRATSVLSISSSELSSGPLPSATGNLHAVVNQVQSTASAMPYKLSTGSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSNFQDMKPVHNIKQGEVKHKIQKPCIYFKSSRGCRNGANCPYQHDVSVQWGAGNVLGAESAKRLKLGPEI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2053 573 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 569 - -
Ssu6g2053 573 ProSiteProfiles Zinc finger C3H1-type profile. 523 550 IPR000571 GO:0046872
Ssu6g2053 573 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 569 - -
Ssu6g2053 573 MobiDBLite consensus disorder prediction 35 57 - -
Ssu6g2053 573 MobiDBLite consensus disorder prediction 35 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2053 Ssu-Chr6 39032449 39039441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2053 81 171 Homeobox Transcription Factor Family AT4G02560 40.426 3.45e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g2053 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2053 - - gmx:102661587 884.404