Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2052 ATGAGAACTCGAAATGCCGATTCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGGCGAGGAAATCCCCTGCGGCAAAGCGCACCTCCGCCACCAAAACCAGGAGCACCAAGAAGAAGGAGGTCTCGCCCGCACCCGATTCTAACCCCGATCAATCTCCCCTGGAGCAGAAATCGTTAGGCAGTGCTAGCAGCACAAAATCTGGGAAGAAGAAGGCTCCAGGGAGACCGAGAATTAAAGCAATTGATACTCCGAATTTGGAAGAACAATGTGAGGCAGTAGCTGATGAAACTCCTATTGAAGATAATACTGAGGCAGCAGAGAAAGTGGAAAATGTTGAAGTAGTTGACGCAGGTAATATTGAGGGTGAGAAAGAGGGGGGACAAGGTGTTGGGTCTGTTGGATTATCTGATGAGAAGGAACAGAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGTTTGCGAATCAGTGGAAAAGGGAAATGATATAATGGAAGTTGAAGAAACTGCTTCCCAGGATGCTTCTGTTTCTTTTAAGCGACCAGGACAGCCCATTGTGGACCTCAATATATCTGCGGATAATGAAGATTGTAGTGGTGAAAAGGAAggagagaaaggaaaggaagagtTGAAAGATCAAGAAGGAGACAAAGGAAAGGAAGGGTTGAAAGAACAGGAAGGAGACAAAGGGAAGGGAGAGTTGAAAGAACAGGAAGGAGACAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGACAAAGGAAAGGAAGAATTGAAAGAACTGGAAGGAGAGAAAGTTAAGGAAGAGTTGAAAGAACAGGAAGGTAAGGAAGGGTTGAAAGAACAGGAAGGACAGGAAGGTAGGGAAGAGTTGAAAGAACAGGAAGGCGAGAAAGGTAAGGAAGAGTTGAAAGAACGGGAAGGACAGAAAGGAAAGGTTGAGTTGAAAGAACAGGAAAGAgacaaaggaaaggaaaagttGAATGAGCAGGAGCCAGAGAAAGCAAAGGGAGAGGAACCAAGTCTTTTTGGACATGAAGAGAACACTGAGTCTTTTGGTGTAGAAGTGAAAGCCCAGATGCAAGAAGAAGATACTAATTCCGGTAAAGATGGTGGTGAAGGATCAAAGAGTGGTGAAAGGTTAGATCTTGGTGAACGAGGGAGGGTGGAGCTTGTTGAAGAAGATCTGGAGGAAGATCCGGAGGAAGATCCAGAAGAAGATCCAGAGGAACCACCAGAAGAAACTGAGGCATTGGAGGAGGAGCATAGGGAATTGGAGGCCATTGCAAATCAgcgaaagattaaaaaagaacacGAGATTTTTGTTGGAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACGAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACACTTGTCCCAGATGTTCAACACGAGGGCTTGAGCCGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATACAAGAGGCTTCAAAGGCCAGATGTTATCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCGGACCCAGAGCTAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAGTTATAAGAATTGTGCTAGCAAGGAATATGTCTACAGCTAAGAGGAAGGATTATggatttgttgatttttctaCACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGCGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATAGGTCATGCTAGGAGTGGAACCTTTTCAAGATCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGACAGGAGTTTCTACCATGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCAGAATGACCgtgattttaatatgtatccgGATTTCCATCAGAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTACTGGTCCATCTAGACCTTATCATGATAGAGCATGGTATGGTATCCCTGACGGAGGCCCCAGTGAGCCTATTCCTCCAAGGAGGCCCTATTCCCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATTTTGATGATCCATATCTATACGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCACCTATGTTTCATGGAACTCGTCAACATGattcTTTTGGGGCTGGCAGCAGACAGTACCCACCTGACTATTATGGTTCTGATTATGGTAGAGGTTCATATTCATCTAATTATGGGGGTGATGGCTCACATAGGCATGGATACTATTATTAG 2784 0.4332 MRTRNADSASKSATPKKTPPARKSPAAKRTSATKTRSTKKKEVSPAPDSNPDQSPLEQKSLGSASSTKSGKKKAPGRPRIKAIDTPNLEEQCEAVADETPIEDNTEAAEKVENVEVVDAGNIEGEKEGGQGVGSVGLSDEKEQKSMEVDEPVVEKVCESVEKGNDIMEVEETASQDASVSFKRPGQPIVDLNISADNEDCSGEKEGEKGKEELKDQEGDKGKEGLKEQEGDKGKGELKEQEGDKGKEELKELEGDKGKEELKELEGEKVKEELKEQEGKEGLKEQEGQEGREELKEQEGEKGKEELKEREGQKGKVELKEQERDKGKEKLNEQEPEKAKGEEPSLFGHEENTESFGVEVKAQMQEEDTNSGKDGGEGSKSGERLDLGERGRVELVEEDLEEDPEEDPEEDPEEPPEETEALEEEHRELEAIANQRKIKKEHEIFVGDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQRPDVIFGHAERTAKVAFAEPIREPDPELMAQVKSVFINGLPPHWDEDHVRELFKSYGEVIRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSGTFSRSGRGFGRGRQPFNNRGNFNRDRSFYHGGHSQIGRMGFQNDRDFNMYPDFHQRQFGPQGAVRGGHYAGSRGAAFTGPSRPYHDRAWYGIPDGGPSEPIPPRRPYSPGGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPMFHGTRQHDSFGAGSRQYPPDYYGSDYGRGSYSSNYGGDGSHRHGYYY 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2052 927 CDD RRM_SF 514 577 - -
Ssu6g2052 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 512 597 IPR000504 GO:0003723
Ssu6g2052 927 CDD RRM_SF 443 502 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 47 70 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 1 153 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 874 896 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 197 348 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 365 396 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 397 423 - -
Ssu6g2052 927 Gene3D - 390 506 IPR012677 -
Ssu6g2052 927 PANTHER NUCLEOLIN-LIKE ISOFORM X1 414 920 - -
Ssu6g2052 927 SMART rrm1_1 442 506 IPR000504 GO:0003723
Ssu6g2052 927 SMART rrm1_1 513 590 IPR000504 GO:0003723
Ssu6g2052 927 SMART rrm1_1 611 686 IPR000504 GO:0003723
Ssu6g2052 927 SUPERFAMILY RNA-binding domain, RBD 510 677 IPR035979 GO:0003676
Ssu6g2052 927 Gene3D - 511 596 IPR012677 -
Ssu6g2052 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 414 920 - -
Ssu6g2052 927 MobiDBLite consensus disorder prediction 718 737 - -
Ssu6g2052 927 Gene3D - 599 753 IPR012677 -
Ssu6g2052 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 610 690 IPR000504 GO:0003723
Ssu6g2052 927 MobiDBLite consensus disorder prediction 171 424 - -
Ssu6g2052 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 612 678 IPR000504 GO:0003723
Ssu6g2052 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 514 580 IPR000504 GO:0003723
Ssu6g2052 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 502 IPR000504 GO:0003723
Ssu6g2052 927 SUPERFAMILY RNA-binding domain, RBD 445 504 IPR035979 GO:0003676
Ssu6g2052 927 CDD RRM_SF 612 686 - -
Ssu6g2052 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 447 510 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2052 Ssu-Chr6 38984733 38993427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2052 443 678 Eukaryotic Initiation Factors Gene Family AT2G23350 22.619 6.38e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2052 - - gmx:100784338 1040.8