Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2051 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTAGTTGGTTATTATCTGAGGAAGAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTTTATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCGGAATGAGTGGTACTTCTTTAGCCACAAAGACAAGAAATATCCAACAGGGACAAGAACCAACAGAGCTACCATGGCGGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTCGAGAATGGACCTCCTCAGGAAGAAGGATGGGTCGTGTGCAGAGCATTCAAGAAAAGAACTAACGGCCAAACGAAGACTATTGAAGAATGGGATCGAAGCTACTTATACGATGAACAAGCACGTGGTGTCAACTCTGTGGTGGACCCTATTGACCTTATCTTAAGACAACCTCAGAAGTTTTCAGCTCAAAATTTCTTGTACAAGCAAGAGACAGAAGCAGATAATTTGAGCTTCATGCATGCAGACCAACTGGTACAGCTTCCTCAGCTAGAATGTCCCTCTTTGCCATTAATAAGGAAGCAAAGCTCAGTGTCCCTTATATCAGACAATAACGAAGAATATGATTATCAAAAGGGATTATCCAACACACAGAAAGTGACTGATTGGAGAGCTCTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGCTTTGCAACACACACTAGCTCGGACATGGCATTGCTGCTACTTCAGAATAGTAGGGAAAATGAAAGGAACAAGTTAAACCCGTTTTCAAATACAAGCTCATCAGACTGTGACATTGGAATATGCGTATTTGAAAAATGA 1008 0.4296 MMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQERCRIGYEERNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFKKRTNGQTKTIEEWDRSYLYDEQARGVNSVVDPIDLILRQPQKFSAQNFLYKQETEADNLSFMHADQLVQLPQLECPSLPLIRKQSSVSLISDNNEEYDYQKGLSNTQKVTDWRALDKFVASQLSQEERHEIEGMSSFATHTSSDMALLLLQNSRENERNKLNPFSNTSSSDCDIGICVFEK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2051 335 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Ssu6g2051 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 313 - -
Ssu6g2051 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 313 - -
Ssu6g2051 335 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Ssu6g2051 335 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Ssu6g2051 335 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2051 Ssu-Chr6 38907566 38910604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2051 2 334 NAC Transcription Factor Family AT2G18060 60.000 2.49e-153 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g2051 NAM 7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2051 - - aprc:113869508 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2379 2 81348402 81350960 Ssu6g2051 6 38907566 38910604 PCT