Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2049 ATGCCTTCCCTTCTAATCCTCATGCTACTGTGCGCACCCTTCTTATCCTGCGCCCGGTGCGGCTCCGTGACGGAGATCCAAGCCTTAACGTCGTTCAAGCTCAACCTCCACGACCCTCTCGGCGCGCTTAACGGCTGGGACCCGTCAACGCCGTTAGCTCCGTGCGACTGGCGCGGCGTTTCGTGCAAAAACGACCGAGTCACTGAGTTACGTTTGCCGCGCCTCCAACTCGGTGGCCAACTCGGGGACCGCATTTCGGACCTACGCATGCTTCGAAGGCTAAGCCTTCGTTCCAACGCCTTCAACGGCACCATCCCCCACTCGCTCTCCAAATGCACGCTCCTACGCGCCTTGTTCTTGGAATACAACTCGCTCTCCGGCGAACTCCCGCCGGAGATCGGAAACCTCGCCGGCCTCCAGATTCTCAACGTCGCCGGCAACAACCTCTCCGGCGAAATTCCCGGCGAGCTTCCTCTCCGTCTGAAATACATCGACCTCTCCGGGAACGCCTTCTCCGGCGAGATTCCGAGCGCCATCGCCGCTCTTTCCGAGCTTCAGCTCATCAACCTCTCGTACAACAAATTCTCCGGCCAGATTCCGGCGCGTGTCGGAGAGCTTCAGAATCTGCAATACCTCTGGCTCGATCATAACTTTCTCGGCGGAACCTTACCTTCGTCTCTCGCGAATTGTTCCTCGCTCGTGCATTTGAGCGTCGAAGGGAACGCGCTCGCTGGCGTGTTGCCGGCGGCGATTTCCGCTCTCCCGAACCTTCAGGTGTTGTCGCTCGCGCAGAACAACTTCACTGGTTCCGTTCCGGCTTCCGTTCTCTGCAACGTCTCGCTCAAAACGCCGTCGCTTCGCATCGTTCAGTTAGGGTTTAACGCTTTCACGGACTTCGCGTGGCCGCAAGCCGCCACGTGTTTCAGCGTTCTCGAGGTTTTGAACATCCAGCGCAATCGCGTGCGCGGCAAGTTTCCGCTGTGGTTGACCAACGTGACCACGCTGTCGGTTCTCGATGTCTCCGGCAACGCGCTCTCCGGCGAGGTTCCGCCGGAAATTGGAAGGCTCGAGAAATTGGAGGAGCTGAAGATGGCCAACAATTCATTTTCCGGCGAGATTCCGCCGGAGATAGGGAAATGTAGGTCCCTGCGCGTTGTTGATTTTGAAGGCAACCGGTTTACCGTCGAGGTTCCTTCGTTTTTCGGTTATTTGACAGGGCTGAAGGTTCTGTCTCTCGGTGGGAACCACTTTTCTGGTTCTGTTCCGGTGAGTTTTGGTGAGCTTGCGTCTCTTGAAACGTTGAGTTTAAGGGATAATAGATTGAATGGTACAATGCCAGAGGAGGTGATGGGGTTGAAGAATTTGACAGTGTTGGACCTTAGTGGGAACAAGTTTTCGGGTCATGTTTCTGGGAGAATTGGGAATCTGAGTAGGTTGATGGTTCTGAATCTCAGTGGCAATGGCTTCCACGGAGAAATTCCTGCTACCCTGGGGAATCTTTTCAGGCTCACTACACTTGACTTGAGCAAACAGAATCTCTCTGGTGAATTGCCATTTGAAATTTCGGGGCTTCCCAGTTTGCAGGTTATTGCTCTGCAGGAGAACAAGTTGTCTGGGGTGATCCCTGAAGGGTTTAGCAGCTTGACCAGTTTGAAATATGTGAACCTAAGCTCTAACCAGTTTTCTGGGCATGTTCCTAAGAACTATGGCTTTCTTCGATCGTTGGTTGTTCTCTCACTGTCTGATAACAGCATCACAGGAATGATTCCCCCAGAGATTGGAAACTGCTCTGACATTGAAATTCTCGAGCTTAGATCAAATCATTTGAGGGGTCCCATTCCCATTGATCTCTCTGGCCTTTCCCATTTGAAAATGCTTGATTTGGGTAAGAACAATTTAACTGGGGCTCTGCCTGCGGATATCTCCAAATGCTCATGGTTAACTGTTTTGTTAGCAGATCACAACCACCTTTCGGGTTCTATACCAGAGTCATTGGCAGAGTTATCACACCTAACAAAGCTGGATCTCTCTGCCAACAAATTGAGCGGGGAAATCCCCACTAATCTACACACGATCCCTCGTTTGGTGTACTTCAATGTCTCAGGTAATAACCTAGAAGGTGAGATTCCACCAATGTTGGGCTCTAAATTCAACGACCCTTCTGCATATGCAAACAACCAGAACTTATGTGGGAAGCCATTGAATAAGAAGTGCCAAGAGATAGACAATGGGGAGAGAAATAGGTTGATTGTGTTAATCATCATCATCGCAGTGGGAGCTTGCTTATTGGCCCTATGTTGCTGCTTCTACATTTTCAGCCTACTAAGATGGCGCAGAAGAATCAAAGCAGCGGTGTCGggggagaagaaaaagagtcCCAGAACAAGTTCCGGAACGAGCCAAGGTCGAAGCAGCACCGACACCAACGGGCCAAAACTCGTCATGTTCAACACCAAAATCACACTCGCCGAAACCATCGAAGCCACGAGGCAATTCAACGAAGAGAACGTGCTGAGCAGAACTAGACACGGCCTGGTATTCAAAGCCTGCTACAACGACGGAATGGTCCTCTCCATTCGCAAGCTCCAAGACGGGTCGCTAGACGAAAACATGTTCCGAAAAGAAGCCGAATCGTTGGGCAAAATCAGGCACCGCAACCTAACCGTTCTCCGAGGCTACTACGCTGGCCCACCGCCAGACGTGAGACTCTTGGTCTACGACTACATGCCCAATGGGAACCTCGCAACGTTGCTCCAAGAAGCTTCTCACTTGGACGGCCACGTTCTGAATTGGCCAATGCGGCACCTCATTGCACTGGGAATCGCCCGCGGCGTAGCGTTTCTGCACCAATGCTCGATGGTCCACGGCGACATCAAACCCCAAAACGTGCTCTTCGATGCGGACTTCGAAGCCCATTTATCGGATTTCGGGCTTGACAAGTTAACGGTGCCCAACCCAGTTGAAGCGTCCACTTCAAGTGCTTCGGTTGGCACGTTGGGTTACGTGTCCCCGGAGGCGGCGCTAACGGGGGAACCCACGAAGGAGTGTGACGTGTACAGCTTCGGGATTGTGCTGCTGGAGCTTCTCACCGGGAAGAGGCCAGTGATGTTCTCGCAGGACGAGGATATAGTTAAGTGGGTGAAGAAACAGTTGCAGAAGGGGCAAATTACGGAGCTACTGGAGCCTGGGTTGTTTGAACTGGACCCAGAATCTTCGGAGTGGGAAGAGTTCTTGCTGGGTGTGAAAGTGGGTTTGCTTTGCACTGCCCCAGACCCTCTTGATCGACCGACCATGTCTGACATCGTGTTCATGCTCGAAGGGTGTCGTGTTGGACCCGATATCGCGTCCTCCGCGGAACCCACCACGCAACCGTCTCCGGCGTGA 3384 0.5248 MPSLLILMLLCAPFLSCARCGSVTEIQALTSFKLNLHDPLGALNGWDPSTPLAPCDWRGVSCKNDRVTELRLPRLQLGGQLGDRISDLRMLRRLSLRSNAFNGTIPHSLSKCTLLRALFLEYNSLSGELPPEIGNLAGLQILNVAGNNLSGEIPGELPLRLKYIDLSGNAFSGEIPSAIAALSELQLINLSYNKFSGQIPARVGELQNLQYLWLDHNFLGGTLPSSLANCSSLVHLSVEGNALAGVLPAAISALPNLQVLSLAQNNFTGSVPASVLCNVSLKTPSLRIVQLGFNAFTDFAWPQAATCFSVLEVLNIQRNRVRGKFPLWLTNVTTLSVLDVSGNALSGEVPPEIGRLEKLEELKMANNSFSGEIPPEIGKCRSLRVVDFEGNRFTVEVPSFFGYLTGLKVLSLGGNHFSGSVPVSFGELASLETLSLRDNRLNGTMPEEVMGLKNLTVLDLSGNKFSGHVSGRIGNLSRLMVLNLSGNGFHGEIPATLGNLFRLTTLDLSKQNLSGELPFEISGLPSLQVIALQENKLSGVIPEGFSSLTSLKYVNLSSNQFSGHVPKNYGFLRSLVVLSLSDNSITGMIPPEIGNCSDIEILELRSNHLRGPIPIDLSGLSHLKMLDLGKNNLTGALPADISKCSWLTVLLADHNHLSGSIPESLAELSHLTKLDLSANKLSGEIPTNLHTIPRLVYFNVSGNNLEGEIPPMLGSKFNDPSAYANNQNLCGKPLNKKCQEIDNGERNRLIVLIIIIAVGACLLALCCCFYIFSLLRWRRRIKAAVSGEKKKSPRTSSGTSQGRSSTDTNGPKLVMFNTKITLAETIEATRQFNEENVLSRTRHGLVFKACYNDGMVLSIRKLQDGSLDENMFRKEAESLGKIRHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLATLLQEASHLDGHVLNWPMRHLIALGIARGVAFLHQCSMVHGDIKPQNVLFDADFEAHLSDFGLDKLTVPNPVEASTSSASVGTLGYVSPEAALTGEPTKECDVYSFGIVLLELLTGKRPVMFSQDEDIVKWVKKQLQKGQITELLEPGLFELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIASSAEPTTQPSPA 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2049 1127 ProSiteProfiles Protein kinase domain profile. 832 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2049 1127 Pfam Protein kinase domain 843 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2049 1127 SUPERFAMILY Protein kinase-like (PK-like) 813 1112 IPR011009 -
Ssu6g2049 1127 SMART serkin_6 832 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2049 1127 MobiDBLite consensus disorder prediction 786 812 - -
Ssu6g2049 1127 Gene3D Ribonuclease Inhibitor 471 746 IPR032675 -
Ssu6g2049 1127 Gene3D Transferase(Phosphotransferase) domain 1 909 1116 - -
Ssu6g2049 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672|GO:0006468
Ssu6g2049 1127 MobiDBLite consensus disorder prediction 790 812 - -
Ssu6g2049 1127 Pfam Leucine Rich repeat 669 684 IPR001611 GO:0005515
Ssu6g2049 1127 Gene3D Ribonuclease Inhibitor 23 159 IPR032675 -
Ssu6g2049 1127 SUPERFAMILY L domain-like 331 575 - -
Ssu6g2049 1127 SMART LRR_typ_2 620 644 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 356 380 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 136 160 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 254 278 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 476 500 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 206 230 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 88 112 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 668 699 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 428 452 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 572 596 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 524 547 IPR003591 -
Ssu6g2049 1127 SMART LRR_typ_2 404 427 IPR003591 -
Ssu6g2049 1127 SUPERFAMILY L domain-like 493 733 - -
Ssu6g2049 1127 SUPERFAMILY L domain-like 46 287 - -
Ssu6g2049 1127 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1123 - -
Ssu6g2049 1127 Gene3D Ribonuclease Inhibitor 280 470 IPR032675 -
Ssu6g2049 1127 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Ssu6g2049 1127 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Ssu6g2049 1127 Pfam Leucine rich repeat 381 441 IPR001611 GO:0005515
Ssu6g2049 1127 Pfam Leucine rich repeat 208 267 IPR001611 GO:0005515
Ssu6g2049 1127 SMART LRR_sd22_2 452 478 - -
Ssu6g2049 1127 SMART LRR_sd22_2 206 229 - -
Ssu6g2049 1127 SMART LRR_sd22_2 620 643 - -
Ssu6g2049 1127 SMART LRR_sd22_2 428 451 - -
Ssu6g2049 1127 SMART LRR_sd22_2 254 281 - -
Ssu6g2049 1127 SMART LRR_sd22_2 668 691 - -
Ssu6g2049 1127 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1123 - -
Ssu6g2049 1127 Gene3D Ribonuclease Inhibitor 160 279 IPR032675 -
Ssu6g2049 1127 Gene3D Phosphorylase Kinase; domain 1 795 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2049 Ssu-Chr6 38760880 38764263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2049 4 1127 Receptor kinase-like Gene Family AT4G36180 66.725 0.0 1465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Ssu6g2049 Pkinase 2.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2049 - - gmx:100804785 1978.76