Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2047 ATGCGAACGCTTTGTGATGCTTGTGACAGTGCGGCGGCTATCGTTTTCTGCGCCGCTGATGAGGCCGCGCTATGCCGTGCCTGTGACGAGAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATGTGAGGGTTGGTCTAGTAAGTCCGAGTGATGTGCCACGCTGCGACATTTGTGAGGATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGGGGTAAAAGAACACACGGAAGATATCTTCTCTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTAATGCAGAAAACCCGGCttcacagcctctggatccagGGGAGACTAAAAGAGGACTAAATCCAGTGCCCAAAACGAAAACGGGAGAAAAACAGCAAAATCACAGGATGCCCCTGGTTCTGACGCCGGAACCTGATGCTGATGGGCATGCCATGATGGAAAACAAAATGATTGATCTGAACATGAAGCCTCAGAGAATACATGAATCAACATCAAATAATCAGAGATGCATTAATAATGAAAGCTTGAGAAAGGCACAAGGAGTGATCCCTCTCAAACCCAAGAAAATTTACGCagCCATAAATGCAGTTGGGACAGGATCATACACCAGAAATGTTTAA 666 0.4444 MRTLCDACDSAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLVSPSDVPRCDICEDAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGNAENPASQPLDPGETKRGLNPVPKTKTGEKQQNHRMPLVLTPEPDADGHAMMENKMIDLNMKPQRIHESTSNNQRCINNESLRKAQGVIPLKPKKIYAAINAVGTGSYTRNV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2047 221 CDD Bbox1_BBX-like 4 47 - -
Ssu6g2047 221 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Ssu6g2047 221 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Ssu6g2047 221 Gene3D Classic Zinc Finger 2 91 - -
Ssu6g2047 221 CDD Bbox1_BBX-like 56 96 - -
Ssu6g2047 221 SUPERFAMILY B-box zinc-binding domain 47 86 - -
Ssu6g2047 221 MobiDBLite consensus disorder prediction 105 143 - -
Ssu6g2047 221 SMART bboxneu5 1 47 IPR000315 GO:0008270
Ssu6g2047 221 SMART bboxneu5 51 96 IPR000315 GO:0008270
Ssu6g2047 221 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Ssu6g2047 221 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu6g2047 221 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Ssu6g2047 221 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2047 Ssu-Chr6 38679476 38681610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2047 1 204 C2C2-CO-like Transcription Factor Family AT4G38960 56.585 5.57e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Ssu6g2047 zf-B_box 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2047 - - vun:114176173 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2373 2 81272110 81274067 Ssu6g2047 6 38679476 38681610 PCT