Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2042 ATGGATTTGCTCCTAGAATTAAAAACCTTGGTGGAACCGTTCCGCACGACGCGCTTGCTCATAATAATCCCCGTGACGCTGCTGCTTTGTTTAGTCTCCCGAATTCGCAGGAAAACGGCGCCGTATCCGCCGGGCCCGAAAGGCCTGCCCATCATAGGCAACATGAACATGATGGAGCAGCTGACGCACAGGGGCTTGGCCAACCTGGCGAAGCAATACGGCGGCGTTTTCCACCTCCGCATGGGGTTCCTCCACATGGTGACGATTTCAAACGCGGAAGCGGCGCGCCAAGTGCTCCAAGTCCACGACAACGTCTTCTCGAACCGCCCCGCCACCGTCGCCATCAGCTACCTCACCTACGAGCGCGCCGACATGGCCTTCGCGCACTACGGCCCCTTCTGGCGCCAGATGCGCAAGATCTGCGTCATGAAGCTCTTCAGCCGCAAGCGCGCCGAGTCGTGGAACTCCGTCAGGGACGAGGTCGACACCGTCGTCCGCTCCGTCGAGGCCAACCTCGGCAGCGCCGTTAACGTCGGGGAGCTACGTCTTCAACCTCACGAAAAACATCATCTATCGCGCGGCTTTCGGGTCCAGCTCCCAGGAGGGGCAGGACGAGGGCTCAACAGCAGGCTCGTTAAGGCTCGTGCCGCGTTGGATGGTTTCATAGATAAGATCATCGACGAGCACGTGCAGAAGAAGAGGCGTGGTGACAGTTGTGACGAAGAAAGTGACATGGTTGATGAGTTGCTCAACTTTTACAGCGAAGAGGCGAAACTGAATAATGAATCCGACGACTTGCAGAACTCCATCAGACTCACCAAGGATAACATCAAAGCCATCATCATGGACGTGATGTTCGGAGGGACCGAAACGGTGGCGTCGGGAATCGAGTGGGCGATGGCGGAGCTAATGAGAAGCCCCGAAGACCTACGGCGCGTGCAGCAAGAGCTCGCGGACGTGGTGGGCCTGGACCGGCGCGTGGAGGAATCGGACTTGGAGAAGCTCGTATACCTAAAATGCGCGGTGAAGGAGACGCTGCGGCTGCACCCGCCGATCCCGCTGCTCCTCCACGAGACGGCGGAGGACGCGGCGGTGTGCGGGTACTTCGTGCCGAAGGGGTCGCGCGTGATGATAAACGCGTGGGCGATAGGGAGGGACAAGGACTCGTGGGAGGACCCGGAAAAGTTCAAGCCTTCGAGGTTTCTGAACCCGGGCGTGCCCGATTTCAAAGGGAACAACTTCGAGTTCATTCCGTTCGGGTCGGGTCGGAGATCCTGCCCCGGAATGCAACTGGGTCTGTACACGCTGGAACTAGCCGTGGCGCACTTGCTTCACTGCTTCACGTGGGAATTACCCGATGGGATGAAACCCAGCGAGTTGGACATGAGTGACGTGTTCGGACTCACCGCGCCCATGGCGAGTCGACTCGTCGCGGTTCCCTCTAAGCGTGTGTTGTGCCCTCTCTAA 1467 0.5896 MDLLLELKTLVEPFRTTRLLIIIPVTLLLCLVSRIRRKTAPYPPGPKGLPIIGNMNMMEQLTHRGLANLAKQYGGVFHLRMGFLHMVTISNAEAARQVLQVHDNVFSNRPATVAISYLTYERADMAFAHYGPFWRQMRKICVMKLFSRKRAESWNSVRDEVDTVVRSVEANLGSAVNVGELRLQPHEKHHLSRGFRVQLPGGAGRGLNSRLVKARAALDGFIDKIIDEHVQKKRRGDSCDEESDMVDELLNFYSEEAKLNNESDDLQNSIRLTKDNIKAIIMDVMFGGTETVASGIEWAMAELMRSPEDLRRVQQELADVVGLDRRVEESDLEKLVYLKCAVKETLRLHPPIPLLLHETAEDAAVCGYFVPKGSRVMINAWAIGRDKDSWEDPEKFKPSRFLNPGVPDFKGNNFEFIPFGSGRRSCPGMQLGLYTLELAVAHLLHCFTWELPDGMKPSELDMSDVFGLTAPMASRLVAVPSKRVLCPL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2042 488 Pfam Cytochrome P450 209 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 Pfam Cytochrome P450 43 175 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 Gene3D Cytochrome P450 35 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 419 428 IPR017972 GO:0005506|GO:0016705
Ssu6g2042 488 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 205 488 - -
Ssu6g2042 488 SUPERFAMILY Cytochrome P450 43 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PANTHER CYTOCHROME P450 84A1-RELATED 205 488 - -
Ssu6g2042 488 PANTHER CYTOCHROME P450 84A1-RELATED 16 183 - -
Ssu6g2042 488 Coils Coil 256 276 - -
Ssu6g2042 488 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 416 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 426 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 276 293 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 379 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 339 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS E-class P450 group I signature 296 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 16 183 - -
Ssu6g2042 488 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS P450 superfamily signature 340 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2042 488 PRINTS P450 superfamily signature 287 304 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2042 Ssu-Chr6 38522229 38526715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2042 7 488 Monolignol Biosynthesis Gene Families AT4G36220 64.559 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2042 K09755 - gmx:100807448 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2367 2 81165563 81168462 Ssu6g2042 6 38522229 38526715 PCT