Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2040 ATGGAGTGTTTGGAAGCAGCGTTGAAGAGCAGTTTTAGGAAAGACATGGCCCTCAAACGCAGCCCCCAAACGGTCCTAGAGGAGTTGTCGTCGCTTAACGTGCAAAACGCCGCCACTTGCGACGACTTCTTCGTGGACGACCTCCTTGACTTCTCACTCCTCGAAAAAGAAGAACCCGACCAACACAACCACGACTCGGCCTCTGTTTCCCCTCAGAACAAGAACCAGGAAATTTACAATTACAATCCCGCCCTCAACGACAATTTCAATAGCGAACTCGCTGTTCCGGCGGAGGAAGAAGTTGCGGACTTGGAGTGGTTGTCCCATTTCGTTGAGGATTCTTTCTCGGAATACTCTATTTCATTCCCCACGGTGACCGTAACAGAGTCAGAGAACCTCGCAGAGGAAGCACCGGAACCGGGAAGCACCGGTTTCACTTTTAAAACCCCGGTTCCGGCCAAGGCAAGGAGCAAGCGAACCCGAACCGGTGTTCGGGTTTGGCTACTGAAGTCCCCTTCGTTCACCGACACGTCATcaacctcttcctcttcctcgtCCTCGTCCTCGTCCTCGCCCTCGAGCCCGTCGCTAATTTGCGCCGCGGTGACAACGAACCTTGTCCCGGAGGAAAAGAGAGCGAAGAGACGGGCCTCGCCGGACGGCGCCGCGGTTCCGGCGCCGCGGCGGTGCAGCCATTGCGGCGTCCAGAAAACCCCTCAGTGGCGAACCGGACCGCTCGGGCGAAGACTCTGTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTGCTGGAGATGCGGCGGAAAAAGGAGGTGGCGGATGGACCGGACACCGGTTCCGGTTCGGCGCCTTCGGTTCCcggtttttgattattttttatttttgtatttttttttttccggttAG 981 0.5382 MECLEAALKSSFRKDMALKRSPQTVLEELSSLNVQNAATCDDFFVDDLLDFSLLEKEEPDQHNHDSASVSPQNKNQEIYNYNPALNDNFNSELAVPAEEEVADLEWLSHFVEDSFSEYSISFPTVTVTESENLAEEAPEPGSTGFTFKTPVPAKARSKRTRTGVRVWLLKSPSFTDTSSTSSSSSSSSSSSPSSPSLICAAVTTNLVPEEKRAKRRASPDGAAVPAPRRCSHCGVQKTPQWRTGPLGRRLCATRAGFGTSRVGYYPNIDPRVALLSRASCTRTTTGRCWRCGGKRRWRMDRTPVPVRRLRFPVFDYFLFLYFFFSG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2040 326 MobiDBLite consensus disorder prediction 174 196 - -
Ssu6g2040 326 PANTHER GATA TRANSCRIPTION FACTOR 1 251 - -
Ssu6g2040 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 251 - -
Ssu6g2040 326 MobiDBLite consensus disorder prediction 131 159 - -
Ssu6g2040 326 PANTHER GATA TRANSCRIPTION FACTOR 1 251 - -
Ssu6g2040 326 Pfam GATA zinc finger 230 251 IPR000679 GO:0006355|GO:0043565
Ssu6g2040 326 Gene3D - 223 262 IPR013088 GO:0006355|GO:0008270
Ssu6g2040 326 MobiDBLite consensus disorder prediction 209 229 - -
Ssu6g2040 326 ProSiteProfiles GATA-type zinc finger domain profile. 224 277 IPR000679 GO:0006355|GO:0043565
Ssu6g2040 326 SMART GATA_3 224 270 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2040 Ssu-Chr6 38367480 38368547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2040 5 270 C2C2-Gata Transcription Factor Family AT5G66320 41.892 4.03e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu6g2040 GATA 3.5e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2040 - - pvu:PHAVU_003G258900g 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2365 2 81079040 81080131 Ssu6g2040 6 38367480 38368547 PCT