Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2032 ATGGCGGGGTTGTTCTCATTAGGCGGAGGGCGAGGTAGCGGCAACCaagaccaccaccaccaccaccaccacaacaacaaccaaaGCAGCGAGTTTCCCCCAGCGGAGACGCTATTCTGGTACAGCAAAAACGACGACGTTTCGTCCTACCACCGAGGGTTGGAGCTATGGAACCAGCAGCAGGAGCAGCACGTGATGCCGCCGCATGCGCGGCCCCTCCTGCAGCGAGATCTTTACTCGTCCGGCGTGGGGCCCGGCCGCGGCGTCTCCGATGATCACTCGTCGTCGAGATCGGCGTTCGCGGCGATGCGCGCGGCGGAGGGAGGAATAAGCTGCCAGGACTGCGGGAACCAAGCGAAGAAAGATTGCCCTCACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGACTGCCAAACCCATGTGAAAAGCACATGGGTTCCGGCTTCTAAACGCCGCGAGCGCCAGGAGGCGCTCGCGGCGTTGCAGGAGCAGCAGCAGCGAGACATTTCCAAACGGCCAAGAGACCCAGCGGCTTGCACTCGTTTGCCCTCGTCAGggttagaGCAAGGGCATTTTCCTGCTATGGTGAGTTCTCCGGCGGAGTTCAGGTGCGTGAGGGTTAGCTGTGTGGAAGATGCGGATGACAGGTATGCATACCAAACGGCTGTGAGCATCGGAGGACATGTGTTCAAAGGAATCCTCTATGACTATGGTcctgaaaataataataatagtaataataataataataataataacaattacatgacTGGGGAGACTTCTTCCACCGGTGTTGTCGCGGCTCAGCCCTTGAACCTCACTGCAAGTGGTGTTGTCTCTTCTTCTGCTGCACTTGTTGATCCTTCTTTGTATTCAGCTCCAGTTAACACCTTCATGGGTGGTAGTGGTACGCAATTCTTCCCTCACACAAGatcttga 945 0.5185 MAGLFSLGGGRGSGNQDHHHHHHHNNNQSSEFPPAETLFWYSKNDDVSSYHRGLELWNQQQEQHVMPPHARPLLQRDLYSSGVGPGRGVSDDHSSSRSAFAAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQEALAALQEQQQRDISKRPRDPAACTRLPSSGLEQGHFPAMVSSPAEFRCVRVSCVEDADDRYAYQTAVSIGGHVFKGILYDYGPENNNNSNNNNNNNNNYMTGETSSTGVVAAQPLNLTASGVVSSSAALVDPSLYSAPVNTFMGGSGTQFFPHTRS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2032 314 MobiDBLite consensus disorder prediction 164 186 - -
Ssu6g2032 314 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 312 IPR007818 GO:0003700|GO:0006355
Ssu6g2032 314 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 193 241 IPR006511 -
Ssu6g2032 314 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 111 153 IPR006510 -
Ssu6g2032 314 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g2032 314 PANTHER PROTEIN SHORT INTERNODES 1 312 - -
Ssu6g2032 314 Pfam Domain of unknown function (DUF702) 109 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2032 Ssu-Chr6 37858724 37860308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2032 1 314 C2H2 Transcription Factor Family AT3G51060 43.817 2.57e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu6g2032 DUF702 1.3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2032 - - gmx:100789129 443.351