Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2022 atggagTTTGCTAGTTTTCATCTTCAGCATCAGCTCCAAGAAGAATCTGCTCATGATCAGTGTATAACTTCAGCAACCCCACCACCTGATTCTAAACCTTTCACTACCACTAGTCAATCATGGATCCCAAGCAACATATACAATGGTTATAACAGTGGGTTTCTAACTGAGAGCTTTACAAATTCAAGAGAACTACATCACAAGCACGCCATGACTGACTCACTAAGAATTTCAACAAGGCAAGCCTTTGGTTTTCACAATGGAAAAAGCCTCACTCAACAGCCAACTAGTGATCTCTTTCCAGGAAGAATCAAAGGTGAAATGTTCAACACCCCCACACAGGCTATGGAGGAATCATGTACACTAATCTCAGTTCATGAACCACGATATTCTCCTAGTTTCTTATCTAGTCTTCGTGTAACTGGTGAAGAATTTTTCCCTGAGGAGAATGTCTTTCATGTTGAGGAGCCAAAGTTTGATGGAGGGATGGCCCTAAGCAAGAGATATAACTTTGGCGATGTTGCCTCAATTTCGAATTTACCAACCCTAGATATGACCTCTTCGTTAGTTTCATGTTCTTTGGGCTTAAATCCTAAAATGTTAGAACTGCATACAAATTACAGTGGAAGTCTTCAACCTTGCTATGATACTTTTGGTCTTAACGAGAGCATATCTTTGAGCCACAGTGACATGCATGGCCTCGAAAATAGTCCATCAAACAGCTCAAATAAAATTTCAACTTTCACAAGTGTAGTAGCATTGACGAAAAGGCCAAGCAATTGCTCTCTACCAAAAGAATCTGAAGCAAAAGCTAAGAAGTCAAGGCCATCATGCCCGCCCCtcaagGTCAGAAAGGAAAAATTGGGGGATAGGATCCAAACTCTTCAGAGATTAGTAGCACCTTTCGGGAAGACCAGTACAGCCTCTGTCTTGAGTGAAGCCATTGGCTACGTCCATTTCCTTCATCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCGCCCAAAGCAAGCCCTCTAGAATGGTGCTGCTGGATTCAAATCAGGTAGATAGCAGAGAATTCAAGCCAGATCTTAGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTACGCATCATGTATTCATCGTTGTGTTTAG 1143 0.4147 MEFASFHLQHQLQEESAHDQCITSATPPPDSKPFTTTSQSWIPSNIYNGYNSGFLTESFTNSRELHHKHAMTDSLRISTRQAFGFHNGKSLTQQPTSDLFPGRIKGEMFNTPTQAMEESCTLISVHEPRYSPSFLSSLRVTGEEFFPEENVFHVEEPKFDGGMALSKRYNFGDVASISNLPTLDMTSSLVSCSLGLNPKMLELHTNYSGSLQPCYDTFGLNESISLSHSDMHGLENSPSNSSNKISTFTSVVALTKRPSNCSLPKESEAKAKKSRPSCPPLKVRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYVHFLHQQIQTLSIPYMKSAQSKPSRMVLLDSNQVDSREFKPDLRSRGLCLVPLSYASCIHRCV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2022 380 MobiDBLite consensus disorder prediction 260 283 - -
Ssu6g2022 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Ssu6g2022 380 CDD bHLH_AtbHLH_like 282 329 IPR045239 -
Ssu6g2022 380 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 376 - -
Ssu6g2022 380 MobiDBLite consensus disorder prediction 15 37 - -
Ssu6g2022 380 MobiDBLite consensus disorder prediction 266 283 - -
Ssu6g2022 380 Gene3D - 282 341 IPR036638 GO:0046983
Ssu6g2022 380 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 376 - -
Ssu6g2022 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2022 Ssu-Chr6 37566934 37571269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2022 226 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 52.000 2.98e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2022 - - var:108339505 572.007