Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2003 ATGTCGTTGAGAAGCATAGTCCGTGAGCTCAAGGAGATGAGAGATGGAATAGGCAGCACATCAAAGCGGGGTGCAGAAAGCAAGTGTCAGCTCAGTCGGACAAAGTCACATGTAGCTCCAGATGTTCTTGTGACTCCATTTGAACAGATTCAACAGGGACAATGGGCAAATCTACCATCAGAATTGCTTTTGGACATAATCCAGAGGGTTGAAGAGAGTGAGACGTCTTGGCCTGCCCGTGCTGTTGTTGTCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCGGGTCCACGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCCACATATCTATTGTACTTTGGTCTAGTTCCATCAGAGAATGACAGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACCGACTTTGTCATATCCTTGGCTGCAGCTGATTTTTCTCGAGCCAGCAAAAAATATCTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATTTATGACAGTCAACCTCCACATGATGCTGCAATTCAATCAAATTGTCAATCTAGTAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAGCTATCTTGTTAGCACTGTTACCTACGAACTGAATGTCCTCTGCACTAGAGGGCCAAGAAGAATGCACTGTGTCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCAACGCCCCAACTCCAACATCTTTCCCTCAAATATTTGATGAACCTTTTTCTCTATCACCAACACTGAAAGAAAAAGCTGCAATTACAGATTTAAACTCTGCTAGTTTATCAGAGCCACCAATGTTGAGCCAAGACTCAATTGAGCGATTACTACTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTTCAGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCTCATAATATTTCTGCAGAGGCAGCAAGAAAGGGTGATCTTGCAGTTTGGAAAGATTGGAAAAGACATAGTTCACCATGGATTACCGTTATCCACTCTCTACCTTCCAAGCATTTGCCATCTGCTTGA 1215 0.4321 MSLRSIVRELKEMRDGIGSTSKRGAESKCQLSRTKSHVAPDVLVTPFEQIQQGQWANLPSELLLDIIQRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPSENDSNKLLLAAKRIRRATGTDFVISLAAADFSRASKKYLGKLRSNFLGTKFTIYDSQPPHDAAIQSNCQSSRRFHSKQVSPRVPACSYLVSTVTYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSLSPTLKEKAAITDLNSASLSEPPMLSQDSIERLLLKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEAARKGDLAVWKDWKRHSSPWITVIHSLPSKHLPSA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2003 404 Pfam Tub family 116 359 IPR000007 -
Ssu6g2003 404 Gene3D Tubby Protein; Chain A 115 375 IPR025659 -
Ssu6g2003 404 PANTHER TUBBY-RELATED 1 367 - -
Ssu6g2003 404 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Ssu6g2003 404 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 367 - -
Ssu6g2003 404 Pfam F-box domain 55 102 IPR001810 GO:0005515
Ssu6g2003 404 SUPERFAMILY Tubby C-terminal domain-like 104 364 IPR025659 -
Ssu6g2003 404 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515
Ssu6g2003 404 Gene3D - 48 102 - -
Ssu6g2003 404 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Ssu6g2003 404 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Ssu6g2003 404 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Ssu6g2003 404 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Ssu6g2003 404 PRINTS Tubby superfamily signature 170 186 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2003 Ssu-Chr6 36733707 36735605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2003 1 369 TUB Transcription Factor Family AT2G18280 59.517 1.10e-150 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu6g2003 Tub 2.2e-78 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2003 K19600 - gmx:100805380 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2313 2 80243730 80245541 Ssu6g2003 6 36733707 36735605 PCT