Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2001 ATGGGAACTGATGGCGGTGAACTGGTAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTCAGGAAATTAGTTGATAGAATCTTGCGGATATTTCCACGTATAGAAGCAGCACGCCCTCGATCCACACTTGGAATAGAGGCTCTGTGTTTGCTAAACAAAGCAGTTGATAAAGCCAAACAACTCCTGCTGTACTGCTCCGAATCTAGTAAACTCTACCTGGCAATAACAGGGGATTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATTGTTAGTGAAAAGCTTAGATCAGATTCAGAATATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGACTAATCAATGATCTTGAGTGCGTGACATTTGTCCTTGACTGTGCTGAAGAAGAAGCTGGGAGGCGCGTGAAACAATTGCTCCAGCAAGGTCCTTCAACCTCAGATAAAGATTCAATGGAAAATTCTGAAATAAAAGATTTTCAGTTTGTAGCAGCAAGACTTAGTATTACATCCCAAGCAGCCATCTTAATAGAGAAACGATCCATTAAGAAGTTGCTGGAAAATGTCAAACCAAATGAGCAGACAAAAAAGATTATCTTGAATAATCTTTTGTTTCTCCTGATAAAGCATCGAAAATTAATCACGGGAGAACAAATGGAGGTTTATTCTCGAAGTGAAGGATCAATCCCAACTGAGAACTCTGATCACGAGTCTCAAAGAATCCTTCCTGTCGAGTCAGACCCATACTTGAACCATGGTCAATATAGAACTCATGCCAGTGAGTTGGGAAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTTAGGTTGATGTACGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAGAAGTGGTTTGATGAGGGTAATACTATATGTCCAAAAACTGAAAAGAAACTGGTTCACAAGGCATTGACTCCAAACGTTGCCTTAAAGGACTTGATATTAAAGTGGTGCGAAACTAATGGAGTCTCCATTGCTGACCCAAGTAGGCAAGCACAAGATTTGCACTCATGGGAAGCCTCCTCCAATTCCATTAAGAGTTTTGGAAGTTCTATGTATGATTTGAACTTCCAGATGGATCTTAGTAACATGTCACTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCCCTTGCTAACGCCAATCATGGCTTAAATTTGATGTTGAGCAAGACCAGTGATAATTTTCGCAGGCATCAATCTCATGCGCAGATACATGACGCTGATCTGATGCATTTGTCTAATCTCCATGAACATCAATGGGAATCTCAATGCCAAATCATTGAAGATGTGAAAATAGATTTCAAACGCAATTACCAAGCTTTTTCCTCTGTGTCACCTGAGATTTTCATGGACCCACTCACGAGATTTCTGAGTACTGCATGCAAGATGCATGACGTAAAAGCAATGAGAGCTGGAACAAAGTTGCTATTGGAATTTATGAAGTGCTGCAGAAATGGTATGACCAATTTAAGTGAAGATACATTCATTATGTTGGCAAATCTTCTTGGCACAGAAGTAATTGGAGAAGTTCTTGCTATAATGGAAGAACTGAGAGGGAATTGGTGTGAAAAAACCAACATTGCAGCTTCCGGTGTACTCACTTCTGTTTCAAAGATCCTTGATTCTGGTAACGAAGAGTTCCAGCGAAAagctattaaaataatgtataatttttcatCCAATGCTCAAATTTGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTACTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACTGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTACTGTCGTTGAAACAAAAGGTTGCATATCTTCTGTTGCTGAAATACTTGGGACTGGCAATGATGAGGAAAAAGAACCTGCACTGGTTATTCTACTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGTTGGTTTTGTATGAGGGGGTTATTCCTTCTCTTGTCAACATCTCCAATAAAGGAAGTGATATGGCAAAGGCTTATGCGCTAGAACTGCTTCGACTTTTGAAGGACGTAAACGAGTGCGAGAATGAAGATTGTTATGAGCCAAATCTCAATGCCTCTCAAGATTCTAACAATCAAGAcaataaatcatcaaagaaatcGTCAATTTTGAAGAAACTGTCACTCTTCTCAAAATCCAGTTCAGTTGCATCAAAAAACAAGAGACGAAACTGA 2289 0.3927 MGTDGGELVETLPNPRSFKVHRTMCTELRKLVDRILRIFPRIEAARPRSTLGIEALCLLNKAVDKAKQLLLYCSESSKLYLAITGDSILSKCQKARKLLVKSLDQIQNMVPVMLAAEISRLINDLECVTFVLDCAEEEAGRRVKQLLQQGPSTSDKDSMENSEIKDFQFVAARLSITSQAAILIEKRSIKKLLENVKPNEQTKKIILNNLLFLLIKHRKLITGEQMEVYSRSEGSIPTENSDHESQRILPVESDPYLNHGQYRTHASELGRLTPPEEYTCPISFRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTEKKLVHKALTPNVALKDLILKWCETNGVSIADPSRQAQDLHSWEASSNSIKSFGSSMYDLNFQMDLSNMSLGSLDTSYNSDSSLANANHGLNLMLSKTSDNFRRHQSHAQIHDADLMHLSNLHEHQWESQCQIIEDVKIDFKRNYQAFSSVSPEIFMDPLTRFLSTACKMHDVKAMRAGTKLLLEFMKCCRNGMTNLSEDTFIMLANLLGTEVIGEVLAIMEELRGNWCEKTNIAASGVLTSVSKILDSGNEEFQRKAIKIMYNFSSNAQICPYMVSLGCIPKLLPFFEDRTLLRDCIHILKNLCDTEEGRVTVVETKGCISSVAEILGTGNDEEKEPALVILLSLCSQRVEYCQLVLYEGVIPSLVNISNKGSDMAKAYALELLRLLKDVNECENEDCYEPNLNASQDSNNQDNKSSKKSSILKKLSLFSKSSSVASKNKRRN 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2001 762 SUPERFAMILY ARM repeat 544 707 IPR016024 -
Ssu6g2001 762 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Ssu6g2001 762 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Ssu6g2001 762 SMART arm_5 668 708 IPR000225 GO:0005515
Ssu6g2001 762 SMART arm_5 625 666 IPR000225 GO:0005515
Ssu6g2001 762 SMART arm_5 586 624 IPR000225 GO:0005515
Ssu6g2001 762 CDD RING-Ubox_PUB 280 320 IPR045210 -
Ssu6g2001 762 MobiDBLite consensus disorder prediction 720 741 - -
Ssu6g2001 762 Gene3D - 479 753 IPR011989 -
Ssu6g2001 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Ssu6g2001 762 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 739 - -
Ssu6g2001 762 Coils Coil 695 715 - -
Ssu6g2001 762 SUPERFAMILY RING/U-box 267 349 - -
Ssu6g2001 762 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Ssu6g2001 762 PANTHER U BOX DOMAIN-CONTAINING 2 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2001 Ssu-Chr6 36709095 36713831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2001 15 716 U-box Gene Family AT4G36550 37.941 5.82e-141 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2001 - - gmx:100798951 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2312 2 80238412 80241817 Ssu6g2001 6 36709095 36713831 PCT