Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g1997 | ATGGACCTGAGAGAGCAAGATAAGGAAATAGAGATGCCTAGCACTTTGGGTTATAATCTACCCACAAGAAATTCCTCTTCTTCCAAGCTATCATCACCAATAGGGGAAAGAAGAGACCAACCTTCTCAATCTCCCACATTAATTTTCAGTGATCCACCCCAAACTTCACATCATCACCATAACCTCCACCCCCCTTCTCTTCCACCAAACCCACTTCAACTTCCACACCCTCACAGACCCAGAAGAGATCCAGATCCAAGTCCTATTTCTCCTCCTATAACAAGCACCCCAAGAACAGCACCACCACAATCTCAGACAACAACAGGAACTGCCACAACATTTAGATACCGAGAATGTCTGAAGAATCATGCAGCAAGCATGGGGGGCCATGTCACAGATGGGTGTGGAGAGTTCATGCCAAACGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAGTCACAACATCATGTTTTCAACTACCACCACACTTACCCCAACAAAAACAACAGGAACATGAACATTCATTCTCCACAAGCTCATCATCTTCAGTTTCCTACACCCCACTCTTCTCTGCACCACCTTCATGGGGTGGTGGCTGCCCCTTCTGGCGGGCCGATTCAGCCCGTGATGTTGGGCTTTGGGGGCCCAGCTGAGTCCTCCAGTGAAGATCTCAACACGTTTCAGACCAATGATGAAGGGCAATTGTTATCGGTGCAGCCTCCACTATCATCCAATAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAGAAGGATAAGATGTTAGAGTTTGCTGAGAAACTCGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGTTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA | 984 | 0.4715 | MDLREQDKEIEMPSTLGYNLPTRNSSSSKLSSPIGERRDQPSQSPTLIFSDPPQTSHHHHNLHPPSLPPNPLQLPHPHRPRRDPDPSPISPPITSTPRTAPPQSQTTTGTATTFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGESQHHVFNYHHTYPNKNNRNMNIHSPQAHHLQFPTPHSSLHHLHGVVAAPSGGPIQPVMLGFGGPAESSSEDLNTFQTNDEGQLLSVQPPLSSNKKRFRTKFTQQQKDKMLEFAEKLGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g1997 | 327 | Pfam | ZF-HD protein dimerisation region | 114 | 166 | IPR006456 | - | |
Ssu6g1997 | 327 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 116 | 165 | IPR006456 | - | |
Ssu6g1997 | 327 | MobiDBLite | consensus disorder prediction | 1 | 111 | - | - | |
Ssu6g1997 | 327 | SUPERFAMILY | Homeodomain-like | 257 | 324 | IPR009057 | - | |
Ssu6g1997 | 327 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 115 | 165 | IPR006456 | - | |
Ssu6g1997 | 327 | Gene3D | - | 254 | 324 | - | - | |
Ssu6g1997 | 327 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 55 | 325 | - | - | |
Ssu6g1997 | 327 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 7 | 55 | 325 | - | - | |
Ssu6g1997 | 327 | MobiDBLite | consensus disorder prediction | 17 | 61 | - | - | |
Ssu6g1997 | 327 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 263 | 320 | IPR006455 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g1997 | Ssu-Chr6 | 36597750 | 36598733 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g1997 | 87 | 327 | ZF-HD Transcription Factor Family | AT2G18350 | 48.400 | 1.53e-63 | 200 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Ssu6g1997 | ZF-HD_dimer | 6.1e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g1997 | - | - | ccaj:109810490 | 443.351 |