Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1997 ATGGACCTGAGAGAGCAAGATAAGGAAATAGAGATGCCTAGCACTTTGGGTTATAATCTACCCACAAGAAATTCCTCTTCTTCCAAGCTATCATCACCAATAGGGGAAAGAAGAGACCAACCTTCTCAATCTCCCACATTAATTTTCAGTGATCCACCCCAAACTTCACATCATCACCATAACCTCCACCCCCCTTCTCTTCCACCAAACCCACTTCAACTTCCACACCCTCACAGACCCAGAAGAGATCCAGATCCAAGTCCTATTTCTCCTCCTATAACAAGCACCCCAAGAACAGCACCACCACAATCTCAGACAACAACAGGAACTGCCACAACATTTAGATACCGAGAATGTCTGAAGAATCATGCAGCAAGCATGGGGGGCCATGTCACAGATGGGTGTGGAGAGTTCATGCCAAACGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAGTCACAACATCATGTTTTCAACTACCACCACACTTACCCCAACAAAAACAACAGGAACATGAACATTCATTCTCCACAAGCTCATCATCTTCAGTTTCCTACACCCCACTCTTCTCTGCACCACCTTCATGGGGTGGTGGCTGCCCCTTCTGGCGGGCCGATTCAGCCCGTGATGTTGGGCTTTGGGGGCCCAGCTGAGTCCTCCAGTGAAGATCTCAACACGTTTCAGACCAATGATGAAGGGCAATTGTTATCGGTGCAGCCTCCACTATCATCCAATAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAGAAGGATAAGATGTTAGAGTTTGCTGAGAAACTCGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGTTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 984 0.4715 MDLREQDKEIEMPSTLGYNLPTRNSSSSKLSSPIGERRDQPSQSPTLIFSDPPQTSHHHHNLHPPSLPPNPLQLPHPHRPRRDPDPSPISPPITSTPRTAPPQSQTTTGTATTFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGESQHHVFNYHHTYPNKNNRNMNIHSPQAHHLQFPTPHSSLHHLHGVVAAPSGGPIQPVMLGFGGPAESSSEDLNTFQTNDEGQLLSVQPPLSSNKKRFRTKFTQQQKDKMLEFAEKLGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM 327
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1997 327 Pfam ZF-HD protein dimerisation region 114 166 IPR006456 -
Ssu6g1997 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 116 165 IPR006456 -
Ssu6g1997 327 MobiDBLite consensus disorder prediction 1 111 - -
Ssu6g1997 327 SUPERFAMILY Homeodomain-like 257 324 IPR009057 -
Ssu6g1997 327 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 115 165 IPR006456 -
Ssu6g1997 327 Gene3D - 254 324 - -
Ssu6g1997 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 325 - -
Ssu6g1997 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 55 325 - -
Ssu6g1997 327 MobiDBLite consensus disorder prediction 17 61 - -
Ssu6g1997 327 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 263 320 IPR006455 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu6g1997 Ssu-Chr6 36597750 36598733 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1997 87 327 ZF-HD Transcription Factor Family AT2G18350 48.400 1.53e-63 200
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu6g1997 ZF-HD_dimer 6.1e-30 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1997 - - ccaj:109810490 443.351
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2307 2 80159328 80160687 Ssu6g1997 6 36597750 36598733 PCT