Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1993 ATGATGCATCGTTGTAGTTGCGGGGGCTCTGAGGGGCACGTGATGGGCACGTGCACATGCGGCGTGTTCCACAGCGAAACCAACTCTTACTCGATGCTGTTTTCTGTGCCCAACGGCCACGGTCCCTATGATGATTACGAACCCGACATGTACAATTCCTTCACGCCCTCTCCTTCTTCCGTGGACTGCACGCTCTCCCTCGGAACCCCCTCCACGCGTTTGACCGAAGACGAGGAGAAACGAAACCGCCACGAACGTCGCTCTTCGGTCACCAACTTTTGCTGGGACTTGATGCAATCGAAACACAGCGCGGAGTCTCAGAGCAAGTCCGGCAGAGGAAGCAACGGTAACTCCAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCCACTCCCCTTTGGAGGAACGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATCAGATTCAAGAAGGAAGAGAGAAGGGCGAGCGCTGCCGCCGCCACGTCAGCAGCGACTTCCGGCGGCGTGTACGGCCACCACAACAATTCTTGGTACGCACACTCGCAGGGCCAGAAGATGGGTAACGAGTTACGCTTCACGGACGATTCCGAGAATGGCATTCCGTTCCTCTCTTGGAAACTCAACGTTTCCGACCGAACGAGCCTCGTTAACGACTTCACAAGATGA 693 0.5657 MMHRCSCGGSEGHVMGTCTCGVFHSETNSYSMLFSVPNGHGPYDDYEPDMYNSFTPSPSSVDCTLSLGTPSTRLTEDEEKRNRHERRSSVTNFCWDLMQSKHSAESQSKSGRGSNGNSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATSAATSGGVYGHHNNSWYAHSQGQKMGNELRFTDDSENGIPFLSWKLNVSDRTSLVNDFTR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1993 230 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
Ssu6g1993 230 Gene3D - 124 178 IPR013088 GO:0006355|GO:0008270
Ssu6g1993 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 165 - -
Ssu6g1993 230 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Ssu6g1993 230 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Ssu6g1993 230 SMART GATA_3 122 177 IPR000679 GO:0006355|GO:0043565
Ssu6g1993 230 MobiDBLite consensus disorder prediction 57 72 - -
Ssu6g1993 230 PANTHER GATA TRANSCRIPTION FACTOR 18 1 227 - -
Ssu6g1993 230 MobiDBLite consensus disorder prediction 57 85 - -
Ssu6g1993 230 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
Ssu6g1993 230 PANTHER GATA TRANSCRIPTION FACTOR 18 1 227 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1993 Ssu-Chr6 36399157 36400682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1993 6 230 C2C2-Gata Transcription Factor Family AT3G50870 44.211 4.29e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu6g1993 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1993 - - gmx:100801623 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2305 2 80088665 80089679 Ssu6g1993 6 36399157 36400682 PCT
Ssu6g1993 6 36399157 36400682 Ssu2g2199 2 78203072 78217742 PCT