LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1984	ATGTCAGACTCGCACCTGACTGCtttctgttttctttcttccatcCTTGCTCTTATTGCCATCTTCATATTCACCAGAAGAAAGAAACCAAGCCTTAATCTTCCCCCTGGCGAAATGGGGTGGCCCCTTCTTGGGGAAACCATAGGGTTTTTGAAGCCTTACCCTGCTGTTACATTAGGAGAATTTATGGAGAAGCACATAGCAAGGTATGGTACAATTTACAAGTCTAACTTGTTTGGGGGGCCAGCCATAGTGTCAGCAGATGCAGGGCTGAATAGGTTCATTTTGCAGAACGAAGGGAAGTTGTTCGAGGCCAGCTATCCTAGGAGCCTTGAGGCAGTGCTTGGGAAATGGTCTATGTTGGTCTTAGTAGGGGACATGCATAGGGACATGAGAAACATATCACTTAACTTTCTCAGCTATGCCAGCCTCCGAACACATCTATTCAAAGAGGTGGAGAGGCATGCCCTTCTAGTTCTAACCTCGTGGAAGCAAAATTGTACATTCTCGGCTCATGAAGAAGCAAAGAGGTTCACCTTCAATTTTATGGCGAAGCATATCATGAGCTTGGATCCTGCGAATCTCGAGACAGAACAATTGAAGAGAGAATATGTCTCTTTCATGAAAGGTGTTGTATCTCCTGCACCTTTGAATTTGCCCGGAACAGCATACAGGAAAGCATTGAAGGCCAGGTCCACCATATTGAAGATCATAGAGGCGAAAATGGAAAGGAGGGCCAGGAGAATCCGAAAGGGAAACGCAAGTTTGGAGGAAGATCATGATCTTCTAAATTGGGTTTTGAagcattcaaattttacaagtGAGCAAATGCTTGACTTGATATTGAGCTTGCTCTTTGCTGGCCATGAAACTTCATCGATAGCCATAGCTCTAGCTATTTACTTCTTGCGGGGTTGTCCTCGAGCTATGCAACAATTAAGGGAAGAACACGTGGAAATAGTCACTTCCAAAAAGCAGAGAGGGGAAGTTGACTTGACTTGGGATGATTACAAAAGAATGGAGTTTACTCATTGCGTTGTGAACGAAACACTCCGACTAGGAAATGTTGTGAGGTTTCTCCACAGGAAGGCTCTTAAAGATGTCCGGTACAAAGGTTATGACATTCCATGTGGGTGGAAAGTCCTTCCGGTGATTTCAGCGGCGCATCTTGATCCTGCACTTTTTGACCAACCTCAGCAATTCAATCCATGGAGATGGCAGggcaataataataaaactggAAGTTGCCAAAACGCGAGTAATATATTCATGCCGTTCGGAGGAGGATCAAGGTTGTGTGCGGGATCAGAGTTAGCCAAACTTGAAATGGCTGTGTTCATCCACCATCTCATCCTCAACTACAATTGGGAACTTGTTGATGCGGATCAACCTTTTGCATACCCTTATGTCGATTTCCCCAAAGGTCTACCCATCAAAGTCCAAAGCCACTCTGTGATATGA	1461	0.4333	MSDSHLTAFCFLSSILALIAIFIFTRRKKPSLNLPPGEMGWPLLGETIGFLKPYPAVTLGEFMEKHIARYGTIYKSNLFGGPAIVSADAGLNRFILQNEGKLFEASYPRSLEAVLGKWSMLVLVGDMHRDMRNISLNFLSYASLRTHLFKEVERHALLVLTSWKQNCTFSAHEEAKRFTFNFMAKHIMSLDPANLETEQLKREYVSFMKGVVSPAPLNLPGTAYRKALKARSTILKIIEAKMERRARRIRKGNASLEEDHDLLNWVLKHSNFTSEQMLDLILSLLFAGHETSSIAIALAIYFLRGCPRAMQQLREEHVEIVTSKKQRGEVDLTWDDYKRMEFTHCVVNETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVISAAHLDPALFDQPQQFNPWRWQGNNNKTGSCQNASNIFMPFGGGSRLCAGSELAKLEMAVFIHHLILNYNWELVDADQPFAYPYVDFPKGLPIKVQSHSVI	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1984	486	Gene3D	Cytochrome P450	24	482	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PANTHER	CYTOCHROME P450 90B1	17	460	-	-
	Ssu6g1984	486	Pfam	Cytochrome P450	35	463	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	426	435	IPR017972	GO:0005506\|GO:0016705
	Ssu6g1984	486	PANTHER	CYTOCHROME P450 26	17	460	-	-
	Ssu6g1984	486	PRINTS	P450 superfamily signature	345	356	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	P450 superfamily signature	287	304	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	P450 superfamily signature	433	444	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	P450 superfamily signature	424	433	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	344	362	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	67	86	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	296	322	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	384	408	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	423	433	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	433	456	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	PRINTS	E-class P450 group I signature	276	293	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu6g1984	486	SUPERFAMILY	Cytochrome P450	31	479	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1984	Ssu-Chr6	36183468	36191630	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1984	26	412	Cytochrome P450	AT3G50660	68.796	0.0	589

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2295	2	79926647	79930697	Ssu6g1984	6	36183468	36191630	PCT