Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1981 ATGTCTTCCCCTCATAACTCTACTCCCCATAACTCAACACCTGATAACTCCACGCCTGATAACTCCACGCCTGATAATTCCACACCTGATGACTCCACGCCCGATAATTCCACGCCTGATAATTCCACACCCAATAAATCCAATTCCAAGCACAATCACAAAAGTTCCTCACAATCCCCTCCTTCGGTGGTGGACCAGACTCCAACATCGACCAAAGAGTCACAAAAATCATTGTCACATGATAAATCCTCGAATTCGAATGATGTCAGTGGCAATAAAGCATTACTCAGAGCTGGGATTGGAGTAGGCTTCGTTCTTCTCGTGCTAGTCATTTTGGGTTTCATTTGGTGctgcaagaagaagaaacaaaagcaaaagaaCCATAATGCAAATCCTTCTCTCGGAAAAGGGAGTAACTATTACAACAGCGGGCAACACCCTCTCCCTAGTTGGCAACCAGGTTTTGGTCCTCATGGGGTAGGGATACAACAACCAGGAATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGTGCACCACATCCTCTAATGACTAGTGGTGAAATGAGCTCTAATTACTCAATGGGAATGGGTTCTTCCTCACCAGGTCTTTCTCTCACAATGAAGGGGGGTACCTTCACTTATGAGGAATTAGCAGCTGCCACCAAAGGATTTGTTAATGAGAACATCATAGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAATTTTGCCTAATGGAAAGGAAGTGGCTGTCAAGAGTCTAAAATCAGGCAGCGGGCAAGGAGAGCGTGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATATTGTATTTGTGGAGGGCAAAGAATGTTGGTCTATGAATTTGTTCCTAATCAAACTTTAGAACACCACCTTCATGGAAAGGGCGTGCCTACCATGGATTGGCCTACTAGAATGCGAATCGCACTTGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAATCCTCGGATTATCCACCGTGATATTAAAGCTTCTAATGTTCTTCTTGATGATAGCTTCGAAGCAAAGGTGTCTGATTTTGGATTGGCTAAGTTGACCACTGATAATAATACACACGTCTCAACTCGTGTCATGGGAACATTTGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCAACCTATAGATTTGACAAATGCCATGGACGATAGCTTAGTGGATTGGGCTCGACCACTCTTGAATAAAGGGCTGGAGGCGGATGGCAACTTTGGAGAGTTAGTGGATCCATTTTTGGAAGGCCATTACAATTCTCAAGAAATGACAAGAATGGCGGCTTGTGCTGCTGCAAGCATTCGTCATTCTGCCAAGAAGCGTTCAAAAATGAGTCAGATTGTAAGAGCACTGGAAGGAGATGTCTCATTGGCAGACTTGAAAGATGGAATGAAGCTTGCAGGGAATAGTAGTGCTTACACTTCATCTGGAAGCTCAGAATATGATACGATGCAATACAATGCTGATATGATGAAATTCAGAAAAGCAATAATGTCAAGCCAAGAATTTAGCGACAGCAATGAGCTTTCTAGCAAGGAGATGGGTCATCATTAG 1698 0.4352 MSSPHNSTPHNSTPDNSTPDNSTPDNSTPDDSTPDNSTPDNSTPNKSNSKHNHKSSSQSPPSVVDQTPTSTKESQKSLSHDKSSNSNDVSGNKALLRAGIGVGFVLLVLVILGFIWCCKKKKQKQKNHNANPSLGKGSNYYNSGQHPLPSWQPGFGPHGVGIQQPGMGMGMGPPSGGWGAPHPLMTSGEMSSNYSMGMGSSSPGLSLTMKGGTFTYEELAAATKGFVNENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNQTLEHHLHGKGVPTMDWPTRMRIALGSAKGLAYLHEDCNPRIIHRDIKASNVLLDDSFEAKVSDFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKQPIDLTNAMDDSLVDWARPLLNKGLEADGNFGELVDPFLEGHYNSQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLADLKDGMKLAGNSSAYTSSGSSEYDTMQYNADMMKFRKAIMSSQEFSDSNELSSKEMGHH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1981 565 ProSitePatterns Protein kinases ATP-binding region signature. 232 254 IPR017441 GO:0005524
Ssu6g1981 565 PANTHER RECEPTOR-LIKE KINASE 4 564 - -
Ssu6g1981 565 SUPERFAMILY Protein kinase-like (PK-like) 205 499 IPR011009 -
Ssu6g1981 565 Gene3D Phosphorylase Kinase; domain 1 198 301 - -
Ssu6g1981 565 ProSiteProfiles Protein kinase domain profile. 226 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1981 565 Gene3D Transferase(Phosphotransferase) domain 1 302 512 - -
Ssu6g1981 565 MobiDBLite consensus disorder prediction 1 89 - -
Ssu6g1981 565 SMART serkin_6 226 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1981 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Ssu6g1981 565 Pfam Protein tyrosine and serine/threonine kinase 229 428 IPR001245 GO:0004672|GO:0006468
Ssu6g1981 565 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1981 Ssu-Chr6 36079560 36083479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1981 86 554 Trihelix Transcription Factor Family AT1G70460 51.464 8.30e-155 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu6g1981 PK_Tyr_Ser-Thr 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1981 - - gmx:100805872 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2290 2 79815356 79817647 Ssu6g1981 6 36079560 36083479 PCT