Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1976 ATGCCGGTTGACAAGGACAACGTTTCCACGGCTTCAGGGGAAGCCAGCGTCTCTTCCTCCGGCAATCAAACAAAACCCGCCACCAAGAAAAAACGAAACCTCCCTGGCATGCCAGATCCGGAGGCAGAGGTGATTGCTCTGTCGCCGAAGACGCTGTTGGCGACGAACCGTTTCGTGTGCGAGATATGCAGCAAGGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGGCGGGGGCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAAGTGAGGAAGAGAGTGTACGTGTGTCCCGAGCTTACGTGCGTGCACCATGACCCTTCTAGGGCGTTGGGGGACTTGACGGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTACGCGGTTCAGTCCGATTGGAAGGCGCACTCCAAGGTCTGCGGCACCAGGGAGTACAAGTGCGACTGCGGAACCGTTTTCTCGAGGAGGGATAGCTTCATCACGCATAGGGCGTTTTGCGACGCGTTGGCGGAGGAGAGTGCGAGATCTCAGACTGTCGTCAAGGCTAATTCGGAGAATGATTCGAAGGTTTTAGCCGGTGATTCGCCGCCGACGCCCACTACTAGTGTCATGTCCTCTGGTTTGCAGACGCAGAATCTAGAGTTGCCAGAAAATAATCCCCCACAGGTCATTGAGGAGGCACAAGCTGTTACTGCTTTAAGTGGGAGCTGTGGCAGCAACAGCAGCAGCACTTGCTCAACAAGCAATGGTGGTGCTACTTGTAATAGTAGTAGCGTGTTTGCAAGTTTGTTTGCTTCTTCAACAGCATCCGGGACACTACAATCTCAGACACCAGCATTCAGTGACTTAATTAGAGCTATGGGGGTTCCAGATCACCCTGCAGATATCTCAGGTCCTTCATCATCCGAGGCCATATCTCTCCGCCTCTCCACCACTGCCGCCTCACCAATTTTCGCAACAGGAGGGCAGGAGCGCCGGCAGTACGCCATGCCGCCGCAGCTGCAGCCTGCCATGTCGGCCACTGCATTGCTGCAGAAAGCCGCTCAAATGGGTGCTGCTGCCACAAATGCCTCTCTACTTCGCGGGTTTGGCATTGTGTCATCATCTTCAGCTCTGGCCTCATCAGGCCAGCAAGATGGCGTGCAATGGGGTCAGCAGCAAGTAGAATCTGAGAGTGGCTCGGTTCCTGCAGGGCTTGGACTTGGTCTTCCATGTGATGGTGGTTCTGGACTAAAGGAATTGATGATGGGAACACCCTCAATGTTTGGTCCTAAGCATACCACTCTTGATTTTCTAGGATTGGGAATGGCTGCTGGTGGCACAGCTGGTGGAGGTTTATCTGCACTTATCACATCTATTGGTGGTGGTTTGGATGTTACTGCAGCTGCAGCTGCAGCTGCAGCAGCAGCAGCCTTTGGTAATGGAGAGTTTTCTGGCAAAGATATTGGAAGGAGCTCTTGA 1509 0.5381 MPVDKDNVSTASGEASVSSSGNQTKPATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPELTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESARSQTVVKANSENDSKVLAGDSPPTPTTSVMSSGLQTQNLELPENNPPQVIEEAQAVTALSGSCGSNSSSTCSTSNGGATCNSSSVFASLFASSTASGTLQSQTPAFSDLIRAMGVPDHPADISGPSSSEAISLRLSTTAASPIFATGGQERRQYAMPPQLQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSALASSGQQDGVQWGQQQVESESGSVPAGLGLGLPCDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGGGLDVTAAAAAAAAAAAFGNGEFSGKDIGRSS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1976 502 SMART c2h2final6 134 154 IPR013087 -
Ssu6g1976 502 SMART c2h2final6 58 80 IPR013087 -
Ssu6g1976 502 SMART c2h2final6 99 129 IPR013087 -
Ssu6g1976 502 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Ssu6g1976 502 MobiDBLite consensus disorder prediction 1 41 - -
Ssu6g1976 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Ssu6g1976 502 MobiDBLite consensus disorder prediction 9 29 - -
Ssu6g1976 502 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 501 - -
Ssu6g1976 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 501 - -
Ssu6g1976 502 Gene3D Classic Zinc Finger 38 104 - -
Ssu6g1976 502 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Ssu6g1976 502 MobiDBLite consensus disorder prediction 193 223 - -
Ssu6g1976 502 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Ssu6g1976 502 Gene3D Classic Zinc Finger 112 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1976 Ssu-Chr6 35885079 35887421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1976 1 502 IDZ Gene Family AT5G66730 56.960 3.99e-179 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g1976 zf-C2H2 0.0087 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1976 K25869 - gmx:100783947 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2282 2 79653462 79655804 Ssu6g1976 6 35885079 35887421 PCT