Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1972 ATGAGAGTTCCCCCATCCCCACAGCCCAACCATTCCTCCACCCCAAACCTCGTCCTCCACACCCTTCCCAACATCGCCAACACCAACAACCCTACCTTCACCTACGAGCCCACCTCGGTCCTCGACCTCTGCCGCAGCCCCAGCCCAGAAAAGAAACCCGCTGTCCCCAAACCCGAACCCCAAgaccaccacaacaacaaccTAGACCTGGACGATCATGTCTTGCCTAATTTGGATTGGTGGGAATCCATCATGAAGGACTTAGCCTTACCCGAAGACTCTCCCACACCCCTTTTGAAGACCAATAACAACATCAACCCATGCATCCCTGATTTCCCACCTTCTCACGACCCACCCTTTGATCACCCCGCGGATTTCACCTCTCTCTCAGAAATTTACTCGAACCAAAACCTTCCCTACAACAACTACACCACAGACACTTTAGACCACTCCTTTCACGACctcaaccaccaccaccaccataacaACAATTGGGATTTCATCGAAGAGCTTATCCGCGCCGCCGATTGCTTCGACAGCAGCCACTTCCAGCTGGCTCAAGCCATGTTGGAGCGGCTCAACCAACGGCTCATTCGCTCGCCCGTGGGAAAACCGCTCCACCGAGCCGCGTTTCACTTCAAAGACGCTCTGCAGTCCATTCTCTCCGGTTCGAACCGGACCGGCTCGAACCGGCTTTCCTCCATGGCGGAGATTGTGCAAACCATCAAAACCTTCAAGGCCTTTTCGGGAATTTCTCCGATCCCAATGTTCTCGATCTTCACCACAAACCAGGCCTTACTCGAAGCCCTAAACGGGTCCTCCTTTGTCCACGTAATCGATTTCGAAATCGGCCTCGGAATCCAATACGCCTCTCTCATGAAAGAGATCGCCGAGAAGGCCGCCGGAGCCTCGCCGCACCTCCGCATCACCGCCGTCGTGCCGGAGGAGTACGCCGTCGAGAGCCGCCTCGTCCGGGAGAATCTCAACCAGTTCGCGCACGACCTCGGGATCCAGGTGCAGGTGGATTTCGTGCCGCTTCGGACCTTCGAAACGGTGTCGTTCAAGGCGGTCAGGTTCCTCGACGGCGAGAGGATCGCGGTGCTGTTAACGCCGGCGATTTTCTGCCGCCTCGGTGCCGCCGGCGGAGGTGGCGTCGCCTCGTTTTTGGCCGACGTGAGGAGGACGGCGCCCGGAGTGGTGCTGTTCGTGGACGGTGAGGGCTGGTCGgaggcggcggcggcggcgtcGTTCCGGCGCGGTGTGGTGAGCAGCTTGGAGTTTTACTCGATGATGCTGGAGTCGCTGGACGCGGCGGTGGCGGCGGGGGGAGGGGGCGAGTGGGTGAGGAGGATCGAGATGCTGCTGCTGCGGCCGAAGATGTTCGCGGCGGTGGAGGGCGCGAGGCGGAGGACGCCGCCGTGGAGGGAGGCGTTTTACGGCGCCGGAATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTATCAGGCCGAATGCTTGCTGGCCAAGGTGCAAATCAGGGGCTTCCACGTGGACAAACGACATGCTGAGTTGGTGCTCTGCTGGCACGAACGAACCATGGTTGCCACGTCAGCTTGGCGGTGTTAG 1605 0.5682 MRVPPSPQPNHSSTPNLVLHTLPNIANTNNPTFTYEPTSVLDLCRSPSPEKKPAVPKPEPQDHHNNNLDLDDHVLPNLDWWESIMKDLALPEDSPTPLLKTNNNINPCIPDFPPSHDPPFDHPADFTSLSEIYSNQNLPYNNYTTDTLDHSFHDLNHHHHHNNNWDFIEELIRAADCFDSSHFQLAQAMLERLNQRLIRSPVGKPLHRAAFHFKDALQSILSGSNRTGSNRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLEALNGSSFVHVIDFEIGLGIQYASLMKEIAEKAAGASPHLRITAVVPEEYAVESRLVRENLNQFAHDLGIQVQVDFVPLRTFETVSFKAVRFLDGERIAVLLTPAIFCRLGAAGGGGVASFLADVRRTAPGVVLFVDGEGWSEAAAAASFRRGVVSSLEFYSMMLESLDAAVAAGGGGEWVRRIEMLLLRPKMFAAVEGARRRTPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAELVLCWHERTMVATSAWRC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1972 534 Pfam GRAS domain family 168 533 IPR005202 -
Ssu6g1972 534 ProSiteProfiles GRAS family profile. 158 533 IPR005202 -
Ssu6g1972 534 MobiDBLite consensus disorder prediction 43 68 - -
Ssu6g1972 534 PANTHER SCARECROW-LIKE PROTEIN 15 6 533 - -
Ssu6g1972 534 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 533 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1972 Ssu-Chr6 35801733 35803337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1972 67 533 GRAS Transcription Factor Family AT4G36710 53.279 1.89e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g1972 GRAS 2.5e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1972 - - gmx:100785004 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2274 2 79606148 79607704 Ssu6g1972 6 35801733 35803337 PCT