Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1971 ATGGGGGCAGGGGAAGAGAGCACAACTAAACCTTCTAAATCATCTTCGTCAACTCAGGTTTTTTCCCTACTATCTTCCtgcacttttttcttttgcttgtcCTTTCTCCTGTGTCTCCTTATCTTCTCTGTTTACGGTAGCAGGAGACACCTACAGCACCTGCTTATCCTGATTGGTCAGGCTCCATGCAGGCCTATTATGCCTGCTGGAGCCACCCCACCTCCCTTTTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATTTATGGGGAAGCCAGCATCCTTTGATGCCACCATATGGGACTCCTGTCCCATATTCAGCTATATATCCTCCTGGGAGTATCTATGCTCATCCTAGCATGGCAGTGACTCCAAGTGTTGTCCAACAAAGTACAGAGGTTGAAGGGAAGGGGCCTGATGGAAAAGATCGGGACtcatccaaaaaattgaaaggaacTTCTGCAAATACAGTTTCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGGAATGATGGCATATCACAAAGtGACGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGTGAAGAGAATACTAACCAACAGGAATCAGCTACAAACAAGAAGGGAAGCTTTGACCGGATGCTGGTTGATGGAGCCAATGCACAGAACAATTCTGCTGGTGCCATTTCTCAATCTTCTGTGCCTGGAAAGCCTGTTGTCTCAATGCCTGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCATCTTCTGGTGGGGCTGAAGCTGCAAAAATGAGACACAACCAATCTGGTGCCCCGGGAGTTGTTATTCTTGGTGATCAATGGATACAAGATGAACGTGAGCTGAAGAGACAGAAGAGGAAACAGTCGAACAGAGAGTCAGCTAGGAGGTCAAGATTACGCAAGCAGGCTGAGTGTGAAGATTTACAAAAGAGGGTGGAGACCCTGGCAAGTGAGAATCGAACTATTAGAGAGGAGCTTCAGAGACTTTCTGAAGACTGCGAGAAGCTTACATCTGAAAATAATTCTATCAAGGAAGAGTTGGAACGGTTGTGTGGGCCAGAAGCAGTTGCTAACCTTGAATGA 1104 0.4493 MGAGEESTTKPSKSSSSTQVFSLLSSCTFFFCLSFLLCLLIFSVYGSRRHLQHLLILIGQAPCRPIMPAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYSAIYPPGSIYAHPSMAVTPSVVQQSTEVEGKGPDGKDRDSSKKLKGTSANTVSKAGESGKAGSGSGNDGISQSDESGSEGSSNASEENTNQQESATNKKGSFDRMLVDGANAQNNSAGAISQSSVPGKPVVSMPATNLNIGMDLWNASSGGAEAAKMRHNQSGAPGVVILGDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLASENRTIREELQRLSEDCEKLTSENNSIKEELERLCGPEAVANLE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1971 367 MobiDBLite consensus disorder prediction 137 151 - -
Ssu6g1971 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 287 350 IPR004827 GO:0003700|GO:0006355
Ssu6g1971 367 MobiDBLite consensus disorder prediction 128 206 - -
Ssu6g1971 367 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 367 IPR044827 GO:0003700|GO:0006355|GO:0043565
Ssu6g1971 367 Gene3D - 288 342 - -
Ssu6g1971 367 MobiDBLite consensus disorder prediction 152 206 - -
Ssu6g1971 367 MobiDBLite consensus disorder prediction 290 313 - -
Ssu6g1971 367 Pfam bZIP transcription factor 285 347 IPR004827 GO:0003700|GO:0006355
Ssu6g1971 367 SUPERFAMILY Leucine zipper domain 288 344 IPR046347 GO:0003700|GO:0006355
Ssu6g1971 367 Coils Coil 298 353 - -
Ssu6g1971 367 CDD bZIP_plant_GBF1 290 340 IPR045314 GO:0003700|GO:0006355
Ssu6g1971 367 Pfam G-box binding protein MFMR 69 122 IPR012900 -
Ssu6g1971 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 292 307 IPR004827 GO:0003700|GO:0006355
Ssu6g1971 367 SMART brlzneu 285 349 IPR004827 GO:0003700|GO:0006355
Ssu6g1971 367 PANTHER G-BOX-BINDING FACTOR 1 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1971 Ssu-Chr6 35787997 35790635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1971 70 367 bZIP Transcription Factor Family AT4G36730 54.849 1.94e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu6g1971 bZIP_1 5.1e-20 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1971 K09060 - gmx:778124 518.464