Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1970 ATGGCGCAAGAACGTCGATTCTTCTCACTCTCAGACCCTGAATTCGTCCTCCGTCTCTCACTATCATTGGCTGGCTCCTCAGAGAACACTGGACTTGGGGCAAATGACGATGGTGCTACTAAAGTAGAGGATGCTTTTGTCTTTGACATAGATCCTAGCTTACTAGTGGATAGCGGTAAACTAATAATTGGCGAACAGATCGGAGAAGGGTCACATTCCATTGTCTACAAAGGATGGTATGAATTCAGTCCTGTGTCCGTAAAGGTTATGCTTCCAATGCAAACATCAGATGCTACTTCTGAATGTAAAGCAAAATTTCAACGGGAGGTGAACTTGATGTCTAggattaaacataaaaatattataaagTTTATTGGCGCCTCTGTGGAACCATCAATGATGATAATTACAGAACTTTTGGAAGGTTGTTCACTTCAGAAACACCTAGAGAGCATTTATCCAAGTACTCTAAGTTTAGAGCAATCCTTAAGTTTTGCTTTGGATATTTCTCAAGTTATGGAGTATTTACATGCAAAGGGCATTATTCACCGCGATCTGAAGCCTGGTAACCTGCTTCTTGTCAAAGAGAACATGCatattttacttgaaaattttgagacaGCTAGAGAGGAGATATCCGGTGAGATGACTTCTGAGGCTGGTACATATCGATATATGGCTCCCGAGGTGTTCAGCAAGGATCCACTTCCAAAAGGAGTAAAGAAATGCTATGACCACAAGGTTGACGTCTACAGCTTTGCAATGGTTCTATGgatgttaataaaaaatcaaactcCATTTAAAGGAAGGAGTGACTTGATGGCAGCATATGCTACTGCACAAAACATGAGGCCTAGCATTGAAGAGTTTCCAAAAGATCTACTTCCCCTTTTGCTGTCATGTTGGGCAGAAGACCCAAAGCTACGACCCGAATTCTCAGAGATCACCCAAACCCTTGCAAAACTTCTCCACAACTGCCGCTCAATAGGGACAACACCCGAGGAACAAGAGTGTCCAACTACAAGTGTGCAGGCACCCATCATCCCTGACTGTGTTGAAGACAACTCCAACCGTGTACTTGAGGCTCAGAGTCAGAATACCAATGTCTGCACAATGGAACAATCTCAGAGCATAGCACAGATCCCTAGTCCAGTCTTAGCCCAAAGCAAGCCTAAAAAGACTCTTAGGAAATGCAAGTGTTTATGGTCATGTTTAAGCAAATGCTTCGGCACTTTTTGA 1239 0.4132 MAQERRFFSLSDPEFVLRLSLSLAGSSENTGLGANDDGATKVEDAFVFDIDPSLLVDSGKLIIGEQIGEGSHSIVYKGWYEFSPVSVKVMLPMQTSDATSECKAKFQREVNLMSRIKHKNIIKFIGASVEPSMMIITELLEGCSLQKHLESIYPSTLSLEQSLSFALDISQVMEYLHAKGIIHRDLKPGNLLLVKENMHILLENFETAREEISGEMTSEAGTYRYMAPEVFSKDPLPKGVKKCYDHKVDVYSFAMVLWMLIKNQTPFKGRSDLMAAYATAQNMRPSIEEFPKDLLPLLLSCWAEDPKLRPEFSEITQTLAKLLHNCRSIGTTPEEQECPTTSVQAPIIPDCVEDNSNRVLEAQSQNTNVCTMEQSQSIAQIPSPVLAQSKPKKTLRKCKCLWSCLSKCFGTF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1970 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Ssu6g1970 412 CDD STKc_MAP3K-like 67 319 - -
Ssu6g1970 412 Gene3D Phosphorylase Kinase; domain 1 51 141 - -
Ssu6g1970 412 Gene3D Transferase(Phosphotransferase) domain 1 142 347 - -
Ssu6g1970 412 ProSiteProfiles Protein kinase domain profile. 61 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1970 412 SMART serkin_6 61 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1970 412 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 7 355 - -
Ssu6g1970 412 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Ssu6g1970 412 PRINTS Tyrosine kinase catalytic domain signature 175 193 IPR001245 GO:0004672|GO:0006468
Ssu6g1970 412 PRINTS Tyrosine kinase catalytic domain signature 137 150 IPR001245 GO:0004672|GO:0006468
Ssu6g1970 412 PRINTS Tyrosine kinase catalytic domain signature 290 312 IPR001245 GO:0004672|GO:0006468
Ssu6g1970 412 PANTHER SERINE-THREONINE PROTEIN KINASE 7 355 - -
Ssu6g1970 412 SUPERFAMILY Protein kinase-like (PK-like) 55 336 IPR011009 -
Ssu6g1970 412 Pfam Protein tyrosine and serine/threonine kinase 62 319 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1970 Ssu-Chr6 35760871 35771351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1970 44 328 MAP Kinase Kinase Kinase AT5G66710 54.895 2.86e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu6g1970 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1970 - K04427 gmx:106796450 620.928