Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1958 ATGACTTATCAAGTCATCAATTCCATCCTTTGGTGCTTTGTTTTAGCTGTTGTGAGTGTCACTCCAAATGTTAGTTCCGCCAACAAACAATCCAAGATAGAAGGCTTAGAAATGAATGAGATAGATCAATGCTGGAGACTGAATCCTGAATGGAGGAAATACCGTTCACAACTCGCCACATGTTCGGTGGGCTATGTAGGGAAGATGACTAACAACATTGGTAAAGACCTCATTCGTTACAAAGTTACTGATCCTAGTGACGATCCAATAAACCCCAAACTTGGCACCTTGAGGTATGGAGCTTCTAGGATTCAAGGAAAAGTCTGGATCACATTCCAAAAAGACATGCACATTAGGCTCGAGAAACCCCTTCTCATTAGTAGTTTCACCACCATCGATGGTCGAGGTATCAATGTCCATATTGTTGATAATGCATGCTTGATGATCTATAAGGTCCAAGTTGATGGAGATGCAATAAGATTGGTTACAGCTTCAAAGATTTGGATTGATCACAACACGTTTTATGATTGCCAAGACGGTCTTCTTGACGTCACACGAGGTTCCACGAATGTGACTATCTCAAACAACTGGTTCAGGGAGCAAAACAAGGTTATGCTTCTCGGGCATAATGATGGATATGTAAGAGACAAGGACATGAAGGTCACTGTTGTGTATAACTATTTTGGACCTAATTGCCACCAACGCATGCCAAGAATTCGCCATGGGTATGCACATGTTGCGAACAATCTTTACATGGGATGGGTGCAATATGCCATAGGTGGAAGCATGGAGCCTAGCCTCAAAAGTGAATCAAACCTCTTCATAGCACCAATGTCGGGGAGTAAGGAGGTAACATGGAGAAAAAGTAGTAATGGAATTAGAGACACATGGGAATTTCATTCGGTGGGGGACGCTTTTGAAAATGGAGCCTCTTTCGTAGAAACACAAGATGGACAAGTACCAAAGCCAAATTATAGCCCTGAACAAAGTTTTAAAGTTGCTGATGTCAAATGTGTGAGATCATTGACAAGCTCATCTGGAGTGTTACGATGTAGTAAAACCTCTATATGTTAA 1074 0.4162 MTYQVINSILWCFVLAVVSVTPNVSSANKQSKIEGLEMNEIDQCWRLNPEWRKYRSQLATCSVGYVGKMTNNIGKDLIRYKVTDPSDDPINPKLGTLRYGASRIQGKVWITFQKDMHIRLEKPLLISSFTTIDGRGINVHIVDNACLMIYKVQVDGDAIRLVTASKIWIDHNTFYDCQDGLLDVTRGSTNVTISNNWFREQNKVMLLGHNDGYVRDKDMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSESNLFIAPMSGSKEVTWRKSSNGIRDTWEFHSVGDAFENGASFVETQDGQVPKPNYSPEQSFKVADVKCVRSLTSSSGVLRCSKTSIC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1958 357 PANTHER PECTATE LYASE 8 152 - -
Ssu6g1958 357 PANTHER PECTATE LYASE 153 354 - -
Ssu6g1958 357 SUPERFAMILY Pectin lyase-like 32 351 IPR011050 -
Ssu6g1958 357 Gene3D - 38 350 IPR012334 -
Ssu6g1958 357 SMART amb_all 77 280 IPR002022 -
Ssu6g1958 357 PANTHER PECTATE LYASE 18-RELATED 153 354 IPR045032 GO:0030570
Ssu6g1958 357 PANTHER PECTATE LYASE 18-RELATED 8 152 IPR045032 GO:0030570
Ssu6g1958 357 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Ssu6g1958 357 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Ssu6g1958 357 Pfam Pectate lyase 141 274 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1958 Ssu-Chr6 35386922 35388639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1958 69 284 Polysaccharide Lyase AT5G09280 64.516 1.15e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1958 K01728 - gmx:100811216 659.062