Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1957 ATGAATCTCTTTCCCATCACCCCAATCTTCACTTTGATTATATTATGTGGCATCTCGGTGGTGGTTCAGGGACAGCAACCTTACATTGGTTTGGCCACAACAGCATGCCACCAAACGGGTAATTCAAACTCCATGCGTGGTTACACTTGTAATGGCGTAACTCCTAGTTGTCAAGCTTACCTCACCTTCAGGGCTCAACCCCTTTACAACTCTGTTCCCTTAATATCTGCTTTGTTGGGTTCTGACGCATCTCAACTTTCTGAGGCAAATTCGGTTTCTGAGGATGCAACCTTTGAAACAAACAAGTTAGTGATTGTTCCAATCAATTGCTCTTGTTCAGGTAACCAGTATTACCAGTTCAACACATCTTACGTGGTCCAAAAAGGGGACTCGTATTTTTTGATCGCCAACAACACCTTTGAAGGCCTCTCAACATGTCAAGCATTGCAGGATCAAAATAACATTCCCGAAGGAGAGTTGATGCCTGGTGCAAAACTAAAAGTTCCTCTTAGATGCGCTTGTCCCTCAAAGAATCAAACTGAGGAAGGTGTCAAGTACTTGTTGAGTTACCTTGTAGCTTCTAATGACATTGCTTACCTCATTGGTAAAAGATTTGGTGTCAGCACCGACACAATTGTCGAAGCTAATAATCTTTCTTCTCAACAACCCGCCATCTATCCTTTTACAACACTTCTAGTACCTCTTCAAGATAAGCCCAAGAGTAACCAAACTTTTgagccatcaccaccaccaccacctccacctcctccaTCTTCTTCAAGTGGAAGCTCAAGCAAAACATGGGTGTATGCAGTTGTCGGAGCCGTTGGAGGTGTTGCATTAATATTAATCCTTTGTGCCATCATTTTCAGGACGCGCTATCtcaaagataataaaaagaaagatgattCCGTGATTGTGTCTGATAGTTTTGTGGCTGTGGCTATTGAGAAACCACAAGGAAAAAAGATGGAGGGAGAGTTAGAGAATTTGGAAGAGATCATATCTGGCATAGGTAAATCGTTCAAGATGTACAGATTTAAGGAACTGCAGAGTGCAACAAATGATTTTGGTCCTAGCAGCTGCATCAAAGGGTCGGTTTACCGTGGTGTTATCAATGGGGATTTGGCTGCGATTAAAAAGATAGATGGTGATGTGTCAAAGGAGATAGAACTTTTGACCAAAGTGAACCATTCTAATGTTATACGCCTTTCTGGGGCTGGCTTTAACGAGGGCTATTGGTATCTTGTTTATGAGTATGCAGCTAATGGAAACTTGAGTGACTGGATCTACATCAATGGAAAGTTTCTGAGTTGGACACAGAGAATGCAGATTACATTAGATGTGGCCACAGGACTTGACTATCTTCATAGTTTCACTTCTCCTCCACATGTCCACAAGGATCTGAAGAGTGGTAACATTCTTCTGGATAGTGCTTTCAGGGCAAAGATTGCAAACTTTGGTCTTGCAAGGTCAGTGGAAAGAGAGGGTGAGGGTGAGCAATATGTGATGACAAGGCATATTGTTGGGACAAGAGGCTACATGGCTCCAGAGTATTTGGAAAATGGTCTTGTGTCTAGAAAGCTTGATGTCTACGCATTTGGGATTCTGATGTTGGAAATGCTCACTGGAAAAGAGGTTGCTGATATTTATGCACAAGGTAATAATATGAATTTGTTGGATGCTTTAAGCGCGGTACTTGATGAGGAAGGTCAACATGAGAGGCTGAAAGAGTTCATGGATCCCTCTCTGCAAGAAAATTATCCAACGGAACTTGCTGTGTTTGTAGCTAGAATGATAGGCACTTGTTTAAAGAAAGATCCAGCAAGTCGCCCTGACATGCACGAGATTGTGTCATCTATGTCCAAAGCCTTGGACTCTTCATTGAGAAGGGAAACGTCCATGGAAAGGAAGTTTTGA 1920 0.4099 MNLFPITPIFTLIILCGISVVVQGQQPYIGLATTACHQTGNSNSMRGYTCNGVTPSCQAYLTFRAQPLYNSVPLISALLGSDASQLSEANSVSEDATFETNKLVIVPINCSCSGNQYYQFNTSYVVQKGDSYFLIANNTFEGLSTCQALQDQNNIPEGELMPGAKLKVPLRCACPSKNQTEEGVKYLLSYLVASNDIAYLIGKRFGVSTDTIVEANNLSSQQPAIYPFTTLLVPLQDKPKSNQTFEPSPPPPPPPPPSSSSGSSSKTWVYAVVGAVGGVALILILCAIIFRTRYLKDNKKKDDSVIVSDSFVAVAIEKPQGKKMEGELENLEEIISGIGKSFKMYRFKELQSATNDFGPSSCIKGSVYRGVINGDLAAIKKIDGDVSKEIELLTKVNHSNVIRLSGAGFNEGYWYLVYEYAANGNLSDWIYINGKFLSWTQRMQITLDVATGLDYLHSFTSPPHVHKDLKSGNILLDSAFRAKIANFGLARSVEREGEGEQYVMTRHIVGTRGYMAPEYLENGLVSRKLDVYAFGILMLEMLTGKEVADIYAQGNNMNLLDALSAVLDEEGQHERLKEFMDPSLQENYPTELAVFVARMIGTCLKKDPASRPDMHEIVSSMSKALDSSLRRETSMERKF 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1957 639 Gene3D LysM domain 119 178 IPR036779 -
Ssu6g1957 639 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 1 635 - -
Ssu6g1957 639 MobiDBLite consensus disorder prediction 244 260 - -
Ssu6g1957 639 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 635 - -
Ssu6g1957 639 ProSiteProfiles LysM domain profile. 122 168 IPR018392 -
Ssu6g1957 639 SMART LysM_2 123 169 IPR018392 -
Ssu6g1957 639 SMART LysM_2 189 234 IPR018392 -
Ssu6g1957 639 Gene3D LysM domain 179 248 IPR036779 -
Ssu6g1957 639 SUPERFAMILY LysM domain 188 234 IPR036779 -
Ssu6g1957 639 SUPERFAMILY Protein kinase-like (PK-like) 343 619 IPR011009 -
Ssu6g1957 639 MobiDBLite consensus disorder prediction 239 262 - -
Ssu6g1957 639 CDD LysM 189 233 IPR018392 -
Ssu6g1957 639 Pfam LysM domain 190 234 IPR018392 -
Ssu6g1957 639 Pfam LysM domain 124 169 IPR018392 -
Ssu6g1957 639 Gene3D Transferase(Phosphotransferase) domain 1 422 638 - -
Ssu6g1957 639 SMART serkin_6 365 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1957 639 ProSiteProfiles LysM domain profile. 188 233 IPR018392 -
Ssu6g1957 639 Pfam Protein kinase domain 367 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1957 639 Gene3D Phosphorylase Kinase; domain 1 328 420 - -
Ssu6g1957 639 CDD LysM 122 168 IPR018392 -
Ssu6g1957 639 ProSiteProfiles Protein kinase domain profile. 314 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1957 Ssu-Chr6 35368668 35370587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1957 12 634 Receptor kinase-like Gene Family AT2G23770 44.762 1.92e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu6g1957 Pkinase 8.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1957 - - gmx:100806077 1018.07