Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1956 ATGTCCACGAAGCTCATCTCAGGCACGAGCCTTCAGCTCTTGAGGCGTTACGATCACCGATCAGAAAGTCACAGAGCACAGTTGCTCgatgatGATGGTCCGGCTTATGTTCGcgtgtttgtttgtgttttgCGTGATATTTTCAAGGAAGATACTGTAGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCTAACCCGAAAAGAGCAAGACTGTTTCATGACGGTACCCTTGCAGATGAAGATACTTATGAGCCTTTCCTAAaaaataaaaataacaaatattatccATCTTTCAGATTGCTCTGGAAAGGAAATTGGTTCATACAAGAAAAAAGTTGCAAGATCCTTGCTGTAATTGTTAGTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCTAATGGAGAAGCATCATATGGAAAGAAACCATTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAGTGGCTTTGTGAACAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCGGATGGGGTCAAGTTACTTGTACCATTGATTTCACCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATTTTTGGCTACTTCAAGGACCCTTCCGCGACTTATTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTTGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTAGGCGCTCAGATGGTTGACCTTCAGCTGCCACAAGTTGTCCAGAGTTTAAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTGAATTCCCTGGAAGAAGGGCTTAAGGATAATATTAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGACCCCATATTCTGGAGAGAAAATATAACCAACTTTGAAGAAAATGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACGTCCAGTGATCCAAGGACTCTGGCTGTTGCTTGCTTTGACCTTTCACAGTTTATCCAGCATCATCCTGCTGGAAGGATCATTGTGACAGACCTCAAGGCCAAGGAACGAGTGATGAAACTTATGAACCATGAGAATGCTGAAGTTACTAAAAATGCACTGCTCTGCATCCAGCGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCagATCGATAAGCTAGTTTCTGGAGTTTCATGCTATTTAAGCCAGCCAACCGTGTATGAAGTTGGTATGATCATGATCTTGGAAGCTACCATGAACCTCAATGAGGAGTGCAGGATTGGGGAATCAATGTACAAGGCCAAAACAATTTTGAATCATATTGAGCTGGCGGATCGATCTCAGAATATGGCACTTACATTCTTTGGATAA 1527 0.406 MSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFVCVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDGTLADEDTYEPFLKNKNNKYYPSFRLLWKGNWFIQEKSCKILAVIVSVRPKNQNGIVSNGEASYGKKPFTTIDDVLIGLVKWLCEQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFIQHHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQIDKLVSGVSCYLSQPTVYEVGMIMILEATMNLNEECRIGESMYKAKTILNHIELADRSQNMALTFFG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1956 508 PIRSF V-ATP_synth_H 1 441 IPR004908 GO:0000221|GO:0046961|GO:1902600
Ssu6g1956 508 Pfam V-ATPase subunit H 1 313 IPR004908 GO:0000221|GO:0046961|GO:1902600
Ssu6g1956 508 SMART arm_5 231 272 IPR000225 GO:0005515
Ssu6g1956 508 SMART arm_5 392 432 IPR000225 GO:0005515
Ssu6g1956 508 SMART arm_5 185 230 IPR000225 GO:0005515
Ssu6g1956 508 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 441 - -
Ssu6g1956 508 Gene3D - 1 321 IPR011989 -
Ssu6g1956 508 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 388 395 IPR018506 GO:0020037
Ssu6g1956 508 Pfam V-ATPase subunit H 319 431 IPR011987 GO:0000221|GO:1902600
Ssu6g1956 508 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 441 IPR004908 GO:0000221|GO:0046961|GO:1902600
Ssu6g1956 508 SUPERFAMILY ARM repeat 2 432 IPR016024 -
Ssu6g1956 508 Gene3D - 333 434 IPR038497 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1956 Ssu-Chr6 35358763 35368189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1956 1 441 Primary Pumps ATPases(2) AT3G42050 77.778 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1956 K02144 - gmx:100796479 806.208