Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1955 ATGGGAGGTTTCTGGCATCCAGAATGTTTTAGTTGCCATGCTTGCAAACTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTTTGCAAGAACTTTATTCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAGTATTGCCCATCGCATGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGACGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAAATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAACAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCGCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGTCTTTGCTTGTCTGAAGAACAAACTATCCCCACTATTTCAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATGTGATAACTGAGCCTTTTAGGCTGATCCGTCATTGCGAAGTGACAGCCATACTCGTTTTGTATGGCCTTCCTAGGTTATTGACAGGATCAATCTTGGCACACGAAATGATGCATGCATGGCTTAGGCTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATGTATGCTGACTCTGGGAATGATGgtgcatcatcatcatcatcttcatcttccTCATCCTCTTCGTCACCTTCGTCCTCTTCATCATCAAAGAAGGGTAAACGTTCTGACTTTGAGAAGAAACTTGGTAAGTATTTCAAACACCAGATTGAGTCAGATAGCTCATCAGCTTATGGAGATGGATTCAGACAGGGTAACCAGGCTGTGCTTAAGTATGGGCTTAGAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1071 0.422 MGGFWHPECFSCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTISRRPRIGAGYQLIDVITEPFRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEMYADSGNDGASSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSSAYGDGFRQGNQAVLKYGLRRTLDHIRMTGSFPY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1955 356 CDD LIM_DA1 1 37 - -
Ssu6g1955 356 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 356 - -
Ssu6g1955 356 MobiDBLite consensus disorder prediction 274 303 - -
Ssu6g1955 356 MobiDBLite consensus disorder prediction 274 298 - -
Ssu6g1955 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 69 - -
Ssu6g1955 356 ProSiteProfiles LIM domain profile. 1 43 IPR001781 -
Ssu6g1955 356 Gene3D Cysteine Rich Protein 1 43 - -
Ssu6g1955 356 Pfam Protein DA1 134 351 IPR022087 -
Ssu6g1955 356 PANTHER PROTEIN DA1-RELATED 2 1 356 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1955 Ssu-Chr6 35348727 35351506 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1955 - - gmx:100806605 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2419 2 82378527 82390110 Ssu6g1955 6 35348727 35351506 PCT