Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1952 ATGGGAATAGCAACACCGTCTTCATCACTTCCTTCCATTCTCTCTCACTCGAAGACGCACCAACAACACCATTCGAATTCTATGTCCCAAGATTAccaccaacaccaccaccaaGGAATCTTCAGCTTCCCGAATGGGTTCGAAAGACCGGCCACTGCGATGACTCACCAAGACCCTCaccagcagcagcagcagcagatTCGGAGGGACAAGGTGAGGGTGCAAGGCTTCGAGCCGCAACCGCCGTTGGTTCCCATCGAAGAAGACGATTCGGGAAGCCTCCCGGTGTACGAAACCGCGGGGATGTTATCGGAGATGTTCAATTTCCCTCCCGGCGCCGCCGAATTATTGGAacagcaacagcaacaacaacaacagcaagcaatgacgacgacgacgacgttTCGGTCCTCCACGAGGACAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGTTAACCGGGTTGGGACCGTTGGGAGATTCAAagaatcatcatcatcatcatcatcatggcAGTGTGAATAGCCGTGACAGCAGCGGCAGCATGGTTCAGCATCACCATCATCAcaaccaccatcatcatcacaATCAGATGTCGAGCATTAATGCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCtccccctcctcctcctccgccTCCTTCTTCATCCTCCACTCTCCACATGCTGCTTCCCACTTTCCCTCCTGGCTCGGGAGGGTCTTTTGGTCAATTCACGTGGCTTCCTGACACCGCTCAAGAAGGAGGACCAAGTAATGTCGTGGAAGGCCCTGGCCACGGCCACGGCCACGGCCTTTCCTTGTCCTTGTCCTCCTCCTTAGAAGCCGCGAAAGCCGAGGAATTGAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAAGCAGGTGGAGGACCCTCTTCTTACAAGAGTCTCGGGGGTCATCACCAACAAGCATTGTTGGGGCATAACCACCAGGGACATGTTGGGTTTGGGGCAGCATCCTCGTCGACATCATCGTTGGGTGTGGTGAATCCGTTGGGGAATTCAAAGTATGTCAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGAGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAGCTATCAAACCCTAGTTCCAATCTTGGAGGtagcggcggcggcggcggcggcggtggTGGTTCTTCGTCTTCATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAGCTTCTAACCATGCTTGACGAGGTGGATCGGAGGTACAGCCACTACTGCGAACAAATGCAGATGGTGGTGAACTCATTTGACATAGTGATGGGTTTTGGTGCTGCGGTTCCATACACGTCACTAGCTCAGAAAGCAATGTCTCGTCACTTTAGGTGTCTAAAGGATGCGATAACGGCGCAGCTGAAGCATAGTTGTGAGTTATTGGGAGAGAAAGATGGGGCAGGGAACTCAGGCTTGACCAAAGGAGAGACCCCAAGGCTCAAGATGCTTGAACAAAGCCTAAGGCAGCAAAGAGCGTTTCATCAGATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCGGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGTTTGTGGAAACCCATGGTGGAAGACATGTACCAACAGGAACTCAAAGAAGCCGACGGGgcagaagaagagagagagaggaaccAAAGCAGCAGCAACAACAGTGGCCACCAACGGGCGCAAACTCCAACGCCCTCGGCCACGGCATCGACAGCGACAGCGCCACCACCTCCGACAACAACAGCATCGACAACGACGACACCACCCACAGGCAAAAACGAAAGCGACCCTTCACTCGCAGcaataaataatcataacaaTAGGCCACAAGGTGGGTTCTCGGAAACCCAAGCGAACTCCGGCGCCGCCGGCGCCCCCTCTGAGGTGGCGCCGCCGCCGGAGCTGCGATCAATGGTCGCCGACGAATCGTGCAGGCACGGTAGCTTGGTTGCGACGGAGTTTGGGACCGCTTCTGCTGCTTCTGACGTTGGCTCCACTCTGATTAGGTTTGGGACCACCGCCGGGGATGTGTCACTCACACTAGGGCTACGTCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGCCATTTGA 2364 0.4835 MGIATPSSSLPSILSHSKTHQQHHSNSMSQDYHQHHHQGIFSFPNGFERPATAMTHQDPHQQQQQQIRRDKVRVQGFEPQPPLVPIEEDDSGSLPVYETAGMLSEMFNFPPGAAELLEQQQQQQQQQAMTTTTTFRSSTRTVGSGGSEWYGNRQGMLTGLGPLGDSKNHHHHHHHGSVNSRDSSGSMVQHHHHHNHHHHHNQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPPPPSSSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQEGGPSNVVEGPGHGHGHGLSLSLSSSLEAAKAEELRMGDSGFLYYNQAGGGPSSYKSLGGHHQQALLGHNHQGHVGFGAASSSTSSLGVVNPLGNSKYVKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGGGGGSSSSSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDIVMGFGAAVPYTSLAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEADGAEEERERNQSSSNNSGHQRAQTPTPSATASTATAPPPPTTTASTTTTPPTGKNESDPSLAAINNHNNRPQGGFSETQANSGAAGAPSEVAPPPELRSMVADESCRHGSLVATEFGTASAASDVGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGAI 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1952 787 MobiDBLite consensus disorder prediction 621 717 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 123 148 - -
Ssu6g1952 787 Gene3D - 552 614 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 635 707 - -
Ssu6g1952 787 ProSiteProfiles 'Homeobox' domain profile. 546 609 IPR001356 GO:0003677
Ssu6g1952 787 Pfam Associated with HOX 361 496 IPR006563 -
Ssu6g1952 787 CDD homeodomain 549 610 IPR001356 GO:0003677
Ssu6g1952 787 SMART HOX_1 549 613 IPR001356 GO:0003677
Ssu6g1952 787 SMART prehox3 355 497 IPR006563 -
Ssu6g1952 787 Pfam Homeobox KN domain 566 605 IPR008422 GO:0003677|GO:0006355
Ssu6g1952 787 MobiDBLite consensus disorder prediction 1 36 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 1 68 - -
Ssu6g1952 787 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 81 776 - -
Ssu6g1952 787 Coils Coil 615 635 - -
Ssu6g1952 787 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 776 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 390 430 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 224 240 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 123 204 - -
Ssu6g1952 787 MobiDBLite consensus disorder prediction 221 289 - -
Ssu6g1952 787 SUPERFAMILY Homeodomain-like 551 616 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1952 Ssu-Chr6 35233973 35241262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1952 355 785 Homeobox Transcription Factor Family AT2G23760 53.909 3.00e-142 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu6g1952 POX 8.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1952 - - gmx:100807143 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2422 2 82460569 82467095 Ssu6g1952 6 35233973 35241262 PCT