Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1950 ATGGCTGGTAAAAAATTTGTAGAACCTGGTACTAAGAATCGACAATGCATAGCTTATATTGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGAGGTATACTGTTGTGCGCATTTGTCATCTCGTATTTTGGGCAGCTCAGGGAAAGCCGAAAAACCTGTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCTTGGTACTAGATGTAAGCATCATGCCCTTCCTGGCTCTTCATTCTGTAAGAAACACCGTCCCCATGCTGAAACAGATGAGACCTCAAATTTAACCCATAGTACACTAAAGAGAAAACACGAAGAAAATCACATTGGTTCAGAGGGCTTGATCAGCAAAGACATGGTAATGATAAATGCTGAAAGTTCATTGCAAGTAGAACCAGTCCCAGCCATTGATGGTGATTCCTTCCTTGAAAGAAGCAACTTAGATGAGAGGCCCATCCTCTCTGGCAATGATCAGATTGAAATGGAGGCACCTCACTGTATAGGCTCTCCTCCTTATGATAACAAGGACCCTTGTTTGGAAGCACCAAAGCGGTATTTCTTGTATTGTGAAAAGCACCTTCCAAGCTGGCTTAAACGGGCAAGAAATGGAAGGAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTAAGGGACTGCTGCTCATGGAAGCAAAAGGTGCACCTGAATAAAGCATGTGAGCTTTTTTACAGGTTATTGAAAAGCATTTTGTCACAAAGAAGCCCAGTTTCTAAGGAAGTTCAGTTCCAGCAGGCTTTAACTGAAGCCTCAAAAGATAATAGTGTTGGAGAATTCCTTACAAAGTTGGTTCATAGTGAAAAGGAGAGAATCAAATTGATTTGGGGATTCAATGATGAAATAGATGTATCCTCACTCATCGAAGGACTACCTCTCGTTCCTTCCGCAGATAATGACAACTTTGATGGTGAAAATGCCATTAAGTGTAAGATTTGCTGTGCAAAATTTCCTGATGACCAAACTCTTGGTAACCATTGGATGGACAACCATAAAAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACGAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGTTTGCTTCTCCAATGTATTCCTTGTGGTAATCATTTTGGAAATATGGAGCAGTTGTGGCTGCATGTTCTATCAGTTCACCCAGTTGAATTCAAGCCATCAAAAGCTCCTGAGCAGCAAACTTTGTCTACTTGTAAGGACTCTCCAGAAAAACTTGAGCAGGGAAATTCAGCTTCTTTGGGGAATAATTCTGAGAATCCAGGTGGTTCGCGGAAGTTTGTTTGCCGGTCTTGTgggttaaaatttgatttactaCCTGACCTGGGTCGCCATCATCAAGCTGCTCATATGGGGCGCAATCTAGTTAGCAGCCGCTCTGCAAAAAGGGGAGTTCGTTATTATACACATAGATTAAAATCTGGCAGACTTAGCCGTCCTAGATTTAAAAATGGTTTGGCAGCAGCTTCGTTTAGGATCAGGAATAGGGCTAATGCTAATTTAAAGAGACACATTCAGGCAACAAAGTCACTTGGCATGGTGGAAACAACCATAAAACCTCATGTAACTGAGACAGCAAATATTGGTAAGTTGGCAGAATATCAATGCTCGGCAGTTgcaaagattttattttctgaaattcaGAAGACTAAACCCCGGCCTAACAATCTTGATATCTTGTCAATTGGTCGTTCTGCATGCTGCAAAGTTAGTCTTAAAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTGAAAGGCTCTATTTGAAGGCAGCAAAACTTTGCAGCGAGCATAACATTCTGGTGAATTGGCACCAGGATAGGTTCATTTGTCCTGGGGGTTGTAAGGTTTTGAAGGACCAAAGGAATCTCTCTCCCTTAGCATCTCTTTCTAATGGTTTCCTAAAGCcaaaatctgtaattttatCAGATCCTGCAAGTGATGAGTTGGATGTGGATGAGTTTCACTACATCATCGATTCACACCATTTAAAAGTAGGGTCCTTACAAAAGGTTACAGTCTTGTGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAAACATTATAAACTCTCTTCTTAGGCATGGGTCCAATGAGGAAGATATAAATCTCTCTAGGCCTTGGGAGAGCTTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTGGTCTTGATTCTGAGAGTCTGCAACTGAGATGTGCTTGCTCATTTTCTACCTGCTGTCCTGAAACATGTGATCACGTGTACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGTAGGTTCCCATATGATGAGAATGGTCGAATAATATTGgagGAAGGTTACCTTGTGTACGAATGTAACCAGATGTGCAAATGCAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGGGTTAAATTGGAAGTCTTTAAAACAGAGAAGAAGGGATGGGCAGTAAGGGCTGGTGAGGCTATCCTTCGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATAAGCAGGAGGCACACAACCGGCACAAAAGATACGGCAAAGAACACTGCAGTTATTTCTATGACGTTGATGATCATGTTAATGATATGAGCAGATTGATTGAAGGACAGGCCCATTATGTCATTGATGCTACTAGATTTGGAAATGTCTCTAGGTTCATCAATAACAGCTGCTCGCCCAATCTTGTGTGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTATGCAAATCGAGATATTGCTTTGGGAGAAGAATTGacatataattatcattatgaGCTTGTTCCTGGAGAGGGATCTCCTTGCCTTTGTGATTCCACGAAGTGCCGGGGACGCCTGTACTAG 3030 0.4076 MAGKKFVEPGTKNRQCIAYIEAKGRQCVRWANDGEVYCCAHLSSRILGSSGKAEKPVSVDTPMCGGTTVLGTRCKHHALPGSSFCKKHRPHAETDETSNLTHSTLKRKHEENHIGSEGLISKDMVMINAESSLQVEPVPAIDGDSFLERSNLDERPILSGNDQIEMEAPHCIGSPPYDNKDPCLEAPKRYFLYCEKHLPSWLKRARNGRSRIISKEVFTEILRDCCSWKQKVHLNKACELFYRLLKSILSQRSPVSKEVQFQQALTEASKDNSVGEFLTKLVHSEKERIKLIWGFNDEIDVSSLIEGLPLVPSADNDNFDGENAIKCKICCAKFPDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGNHFGNMEQLWLHVLSVHPVEFKPSKAPEQQTLSTCKDSPEKLEQGNSASLGNNSENPGGSRKFVCRSCGLKFDLLPDLGRHHQAAHMGRNLVSSRSAKRGVRYYTHRLKSGRLSRPRFKNGLAAASFRIRNRANANLKRHIQATKSLGMVETTIKPHVTETANIGKLAEYQCSAVAKILFSEIQKTKPRPNNLDILSIGRSACCKVSLKASLEEKYGILPERLYLKAAKLCSEHNILVNWHQDRFICPGGCKVLKDQRNLSPLASLSNGFLKPKSVILSDPASDELDVDEFHYIIDSHHLKVGSLQKVTVLCDDISFGKESIPVICVVDQNIINSLLRHGSNEEDINLSRPWESFTYVTKPMLDQSLGLDSESLQLRCACSFSTCCPETCDHVYLFDNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNQMCKCNKTCPNRILQNGIRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDKQEAHNRHKRYGKEHCSYFYDVDDHVNDMSRLIEGQAHYVIDATRFGNVSRFINNSCSPNLVCYQVLVESMDCERAHIGLYANRDIALGEELTYNYHYELVPGEGSPCLCDSTKCRGRLY 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1950 1009 ProSitePatterns Zinc finger C2H2 type domain signature. 327 348 IPR013087 -
Ssu6g1950 1009 Pfam SET domain 865 985 IPR001214 GO:0005515
Ssu6g1950 1009 ProSitePatterns Zinc finger C2H2 type domain signature. 395 416 IPR013087 -
Ssu6g1950 1009 Gene3D SET domain 693 990 IPR046341 -
Ssu6g1950 1009 ProSiteProfiles Pre-SET domain profile. 775 851 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu6g1950 1009 SMART c2h2final6 325 348 IPR013087 -
Ssu6g1950 1009 SMART c2h2final6 393 416 IPR013087 -
Ssu6g1950 1009 SMART c2h2final6 462 485 IPR013087 -
Ssu6g1950 1009 SMART c2h2final6 359 382 IPR013087 -
Ssu6g1950 1009 Pfam Zinc finger C2H2-type, 3 repeats 361 486 IPR040689 -
Ssu6g1950 1009 SUPERFAMILY SET domain 703 999 IPR046341 -
Ssu6g1950 1009 ProSiteProfiles SET domain profile. 854 986 IPR001214 GO:0005515
Ssu6g1950 1009 ProSiteProfiles Zinc finger C2H2 type domain profile. 359 382 IPR013087 -
Ssu6g1950 1009 ProSiteProfiles Zinc finger C2H2 type domain profile. 462 490 IPR013087 -
Ssu6g1950 1009 SMART set_7 854 992 IPR001214 GO:0005515
Ssu6g1950 1009 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 3 1009 - -
Ssu6g1950 1009 MobiDBLite consensus disorder prediction 424 457 - -
Ssu6g1950 1009 Pfam Pre-SET motif 714 846 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu6g1950 1009 MobiDBLite consensus disorder prediction 88 110 - -
Ssu6g1950 1009 MobiDBLite consensus disorder prediction 425 457 - -
Ssu6g1950 1009 ProSitePatterns Zinc finger C2H2 type domain signature. 464 485 IPR013087 -
Ssu6g1950 1009 Gene3D Classic Zinc Finger 319 390 - -
Ssu6g1950 1009 SMART preset_2 711 838 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu6g1950 1009 ProSiteProfiles Post-SET domain profile. 993 1009 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1950 Ssu-Chr6 35160270 35164839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1950 4 1008 C2H2 Transcription Factor Family AT2G23740 50.491 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu6g1950 Pre-SET 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1950 - - gmx:100808203 1925.21