Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1927 ATGTTGCATTACAAAATATTGGGTGTTGCCACATTGGCCAGGAGAAAAAACATTCTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGTGTCAAGCTTCCACTCATGGACTAAGGTTACAAGTAAAACTGGGGAAGACATAAGGTTAAGTTCTAAAAAGAACTTAAATGATCCTGGTGAACATCTTGGGTTGATATTGTGCTTTGTTTGTTCTGTATGGTTGCCTGTCTCACCTAATGTTCTGTTTGGTTTCTTGAAGGATGAGACACGCTGCCGAGTGGGATATCATGTCAAGTGGTGGGATAGTGTAGTCCATTACAAATGTAGCCAATGGATAAGACCAAGGCAATGA 366 0.4126 MLHYKILGVATLARRKNILKLAQRMTWSFCHAIGVSSFHSWTKVTSKTGEDIRLSSKKNLNDPGEHLGLILCFVCSVWLPVSPNVLFGFLKDETRCRVGYHVKWWDSVVHYKCSQWIRPRQ 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1927 121 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 8 95 - -
Ssu6g1927 121 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 8 95 IPR042160 -
Ssu6g1927 121 SUPERFAMILY Bet v1-like 19 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1927 Ssu-Chr6 34494974 34495414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1927 7 95 Homeobox Transcription Factor Family AT1G79840 62.921 1.24e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1927 K09338 - gmx:100809926 162.925